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GSD_0003MVG.1

Panama/GSD_0003MVG.1/2024-02-16
M. Chen-German, D. Arauz, C. Aguilar, M. Vega, C. Gonzalez, J. Gondola, L. Moreno, L. Cerezo, L. Franco, J. Mendez-Rico, J. M. Pascale, S. Lopez-Verges, A. A. Martinez, B. Moreno, A. Martinez, O. Chavarria & A. Moreno

Gorgas Memorial Institute for Health Studies, Virology and Biotechnology Research

Submission details

Submission ID
PQ014894.1
Submitting group
Date submitted
2026-03-16 09:54:10 UTC
Date released
2026-03-16 10:02:10 UTC

Clade & Lineage

Clade
4II_B.2

Sample details

Collection country
Panama
Collection subdivision level 1
Panama
Collection date
2024-02-16
Isolate name
DENV4-A001363

Host

Host

INSDC

INSDC accession
NCBI release date
2024-10-29
NCBI update date
2024-10-29

Alignment and QC

Length
10187 (95.6%)
Total SNPs
343
Total unknown nucs
8

Nucleotide mutations

Mutations called relative to the NC_002640.1 reference

Substitutions

  • A224G
  • G335A
  • G356A
  • A362T
  • C414T
  • C431T
  • C452A
  • G497A
  • T551C
  • T593C
  • C603T
  • T614C
  • G674A
  • C689T
  • C839T
  • A854G
  • T866C
  • C887T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_002640.1 reference

Substitutions

E

  • E:M163T
  • E:E172G
  • E:K174N
  • E:Y233H
  • E:I351V

NS1

  • NS1:A6V
  • NS1:S141T
  • NS1:S152F
  • NS1:V178M
  • NS1:I287V

NS2A

  • NS2A:V35A
  • NS2A:T49S
  • NS2A:S65F
  • NS2A:I72T
  • NS2A:V79A
  • NS2A:V112T
  • NS2A:P159S
  • NS2A:Q188H
  • NS2A:V192I

NS2B

  • NS2B:V74I
  • NS2B:I95V
  • NS2B:V116L

NS3

  • NS3:K14Q
  • NS3:K213R
  • NS3:P435T
  • NS3:E558K

NS4A

  • NS4A:V58I
  • NS4A:L94M

NS4B

  • NS4B:F13L
  • NS4B:T56A

NS5

  • NS5:R246K
  • NS5:T314A
  • NS5:Q548K
  • NS5:K649R
  • NS5:V653I
  • NS5:G676S
  • NS5:T826V
  • NS5:I837V
Deletions
N/A
Insertions
N/A