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GSD_000MFUM.1

USA/GSD_000MFUM.1/2026-08-27
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Girinathan, H. Mammadova, P. Leeson & D. Gratalo

Perimeter

Submission details

Submission ID
PZ960469.1.seg1/PZ960470.1.seg2/PZ960468.1.seg3/PZ960463.1.seg4/PZ960466.1.seg5/PZ960465.1.seg6/PZ960464.1.seg7/PZ960467.1.seg8
Submitting group
Date submitted
2026-09-16 05:05:11 UTC
Date released
2026-09-16 05:26:21 UTC

INSDC

bioprojectAccession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-09-09

Clade

Clade HA
V1A.3a.2
Clade NA
B.8

Sample details

Collection country
USA
Collection subdivision level 1
Florida
Collection date
2026-08-27
Isolate name
B/Florida/GKISBBBH89946/2026

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg1
2357 (100%)
Total inserted nucs seg1
23
Total SNPs seg1
51
Length seg2
2378 (100%)
Total inserted nucs seg2
20
Total SNPs seg2
62
Length seg3
2289 (100%)
Total inserted nucs seg3
44
Total SNPs seg3
50
Length seg4
1847 (98.5%)
Total deleted nucs seg4
9
Total SNPs seg4
52
Length seg5
1817 (100%)
Total inserted nucs seg5
67
Total SNPs seg5
38
Length seg6
1528 (100%)
Total inserted nucs seg6
127
Total SNPs seg6
39
Length seg7
1160 (100%)
Total inserted nucs seg7
13
Total SNPs seg7
22
Length seg8
1053 (98.4%)
Total inserted nucs seg8
4
Total SNPs seg8
27

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C113T
  • G197A
  • A200G
  • A359G
  • G383A
  • C434T
  • T522C
  • C528A
  • A563G
  • C746A
  • G752A
  • C798T
  • A827G
  • C854T
  • A908G
  • A950G
  • T962C
  • T968C

seg2

  • G12A
  • A54G
  • G81A
  • T165C
  • T168C
  • T171C
  • T174C
  • T240C
  • T300A
  • A327G
  • T330C
  • C342T
  • A405G
  • G441A
  • G447A
  • G510A
  • C513T
  • A576G

seg3

  • T88C
  • T111C
  • C117T
  • T339C
  • G414A
  • T423C
  • A468G
  • G549A
  • T654C
  • G735A
  • A771G
  • C813T
  • G867A
  • C897T
  • G906A
  • A935G
  • G936A
  • A987G

seg4

  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • A351G
  • C375T
  • C378T
  • A427G
  • A435G
  • C441T
  • T444C
  • T456C
  • G457A
  • A484G
  • C509T
  • T510C
  • C528A

seg5

  • C3T
  • T46C
  • A55G
  • C66T
  • C178T
  • T213G
  • A224G
  • A235G
  • G244A
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • C409T
  • A454G
  • C523T
  • C608T

seg6

  • T9C
  • T34C
  • A42G
  • C125A
  • T134C
  • G194A
  • T212C
  • A358G
  • C394T
  • C399T
  • C486A
  • A504G
  • C519T
  • C534T
  • A660C
  • T714A
  • C849T
  • T879C

seg7

  • C33T
  • G35A
  • C46T
  • A83G
  • T113C
  • T125A
  • G316A
  • A419G
  • A467T
  • G482A
  • G500T
  • G521A
  • G536A
  • A566G
  • G594A
  • G602A
  • C656T
  • T787C

seg8

  • G18A
  • C19A
  • C23A
  • G25A
  • G26A
  • G27A
  • A118G
  • T163C
  • T166C
  • G190A
  • T341C
  • A352C
  • T355C
  • C358A
  • A377G
  • T391C
  • G392A
  • C419T
Deletions

seg4

562-570
Insertions

seg1

ins_0:GCCTTTA, ins_2334:GGCTCGTGTTTCTACT

seg2

ins_0:GTTTTC, ins_2358:AATGCTCGTGTTTC

seg3

ins_0:GCGTTTGATTTATCATA, ins_2241:AGAAAC, ins_2245:ATCAAAAATGCTCGTGTTTCT

seg5

ins_0:GCATTTTCTTGTGAACTCCA, ins_1750:CGTTTGGAGTATGGGTGTTTATTCTCATTAAAATAAATGTAAAAAAT

seg6

ins_0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTAAACAATTATCCTTACTAAACTTAATTATTTCTGAAAAAT

seg7

ins_0:GCACTTTCTTA, ins_1147:AA

seg8

ins_1066:TAAA

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:G184E
  • HA1:N197E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

M1

  • M1:T15I
  • M1:R105K
  • M1:V198I

NA

  • NA:F12L
  • NA:P42Q
  • NA:I45T
  • NA:R65H
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:S295R
  • NA:T311A
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:D384G
  • NA:A395V
  • NA:S397K
  • NA:V401I

NEP

  • NEP:L30S
  • NEP:S93P

NP

  • NP:I9M
  • NP:T13I
  • NP:V62G
  • NP:T66A
  • NP:V453A

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:K116E
  • NS1:D121N
  • NS1:L130F
  • NS1:H197Q
  • NS1:H201Y

PA

  • PA:K312R
  • PA:T352A
  • PA:S530T
  • PA:F709V
  • PA:N714S

PB1

  • PB1:M65I
  • PB1:I187M
  • PB1:V474I
  • PB1:K573R

PB2

  • PB2:A275S
  • PB2:X303I
  • PB2:I492T
  • PB2:X582E
  • PB2:S630N
Deletions

HA1

HA1:162-164
Insertions
N/A