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GSD_000MFVK.1

USA/GSD_000MFVK.1/2026-08-27
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Girinathan, H. Mammadova, P. Leeson & D. Gratalo

Perimeter

Submission details

Submission ID
PZ960477.1.seg1/PZ960478.1.seg2/PZ960476.1.seg3/PZ960471.1.seg4/PZ960474.1.seg5/PZ960473.1.seg6/PZ960472.1.seg7/PZ960475.1.seg8
Submitting group
Date submitted
2026-09-16 05:05:11 UTC
Date released
2026-09-16 05:26:21 UTC

INSDC

bioprojectAccession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-09-09

Clade

Clade HA
V1A.3a.2
Clade NA
B.8

Sample details

Collection country
USA
Collection subdivision level 1
Virginia
Collection date
2026-08-27
Isolate name
B/Virginia/GKISBBBJ77151/2026

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg1
2340 (100%)
Total inserted nucs seg1
6
Total SNPs seg1
50
Length seg2
2382 (100%)
Total inserted nucs seg2
24
Total SNPs seg2
58
Length seg3
2290 (100%)
Total inserted nucs seg3
45
Total SNPs seg3
52
Length seg4
1847 (98.5%)
Total deleted nucs seg4
9
Total SNPs seg4
51
Length seg5
1818 (100%)
Total inserted nucs seg5
68
Total SNPs seg5
33
Length seg6
1528 (100%)
Total inserted nucs seg6
127
Total SNPs seg6
45
Length seg7
1155 (100%)
Total inserted nucs seg7
8
Total SNPs seg7
20
Length seg8
1066 (99.6%)
Total inserted nucs seg8
4
Total SNPs seg8
23

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C74T
  • C113T
  • G197A
  • A200G
  • A359G
  • G383A
  • C434T
  • T522C
  • C528A
  • A563G
  • C746A
  • A827G
  • C854T
  • A908G
  • A950G
  • T968C
  • T995C
  • G1064A

seg2

  • G12A
  • A54G
  • G81A
  • T165C
  • T168C
  • T171C
  • T174C
  • T240C
  • C258T
  • T300A
  • T330C
  • C342T
  • A405G
  • G441A
  • G447A
  • G510A
  • C513T
  • A576G

seg3

  • T88C
  • T111C
  • C117T
  • T339C
  • G414A
  • T423C
  • G549A
  • A618G
  • T654C
  • A771G
  • C813T
  • G867A
  • C897T
  • G906A
  • A935G
  • G936A
  • A987G
  • C1006T

seg4

  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • A351G
  • C375T
  • C378T
  • A427G
  • A435G
  • C441T
  • T444C
  • T456C
  • G457A
  • A484G
  • C509T
  • T510C
  • C528A

seg5

  • C3T
  • T46C
  • A55G
  • C178T
  • T213G
  • A224G
  • A235G
  • G244A
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • A454G
  • C523T
  • C608T
  • A634G
  • A763G

seg6

  • T9C
  • G70T
  • C125A
  • T134C
  • G139A
  • T172A
  • G194A
  • T212C
  • T333C
  • A358G
  • G368A
  • C394T
  • C399T
  • C486A
  • A504G
  • C519T
  • C534T
  • T594C

seg7

  • C33T
  • C46T
  • A83G
  • T113C
  • T125G
  • G131A
  • G316A
  • A419G
  • G482A
  • G500T
  • G521A
  • G536A
  • A566G
  • C656T
  • C713T
  • T787C
  • C808T
  • G889A
  • A919G
  • A967G

seg8

  • G6A
  • G26A
  • A118G
  • T163A
  • T166C
  • G190A
  • T341C
  • A352C
  • T355C
  • C358A
  • T385C
  • T391C
  • G417T
  • C419T
  • C604T
  • A610T
  • C632T
  • C648T
Deletions

seg4

562-570
Insertions

seg1

ins_0:CTTTA, ins_2334:G

seg2

ins_0:GTTTTC, ins_2358:AATGCTCGTGTTTCTACT

seg3

ins_0:GCGTTTGATTTATCATA, ins_2241:AGAAAC, ins_2245:ATCAAAAATGCTCGTGTTTCTA

seg5

ins_0:GCATTTTCTTGTGAACTCCA, ins_1750:CGTTTGGAATATGGGTGTTTTATTCTCATTAAAATAAATATAAAAAAT

seg6

ins_0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTATCCTTACTAAACTTAATTGTTTCTGAAAAAT

seg7

ins_0:TTCTTA, ins_1147:AA

seg8

ins_1066:TAAA

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154T
  • HA1:E183K
  • HA1:G184E
  • HA1:N197E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

M1

  • M1:T15I
  • M1:R105K

NA

  • NA:V24L
  • NA:P42Q
  • NA:I45T
  • NA:A47T
  • NA:S58T
  • NA:R65H
  • NA:V71A
  • NA:I120V
  • NA:G123E
  • NA:K220N
  • NA:F266L
  • NA:S295K
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:G378E
  • NA:D384G
  • NA:A395V

NEP

  • NEP:L30S
  • NEP:S93P

NP

  • NP:I9M
  • NP:V62G
  • NP:T66A
  • NP:V453A

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:C129F
  • NS1:L130F
  • NS1:H201Y
  • NS1:T206I

PA

  • PA:K312R
  • PA:T352A
  • PA:S530T
  • PA:F709V
  • PA:N714S
  • PA:I723V

PB1

  • PB1:M65I
  • PB1:I187M
  • PB1:V474I
  • PB1:K573R
  • PB1:R679K
  • PB1:R705K
  • PB1:G747S

PB2

  • PB2:X303I
  • PB2:I492T
  • PB2:X582E
  • PB2:S630N
Deletions

HA1

HA1:162-164
Insertions
N/A