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GenSpectrum
Organisms
Influenza B/Victoria
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Influenza A/H1N1pdm
Influenza A/H3N2
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Influenza B
Influenza B/Victoria
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Influenza B/Victoria
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GSD_000MFWH.1
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USA/GSD_000MFWH.1/2026-08-05
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Submission details
Submission ID
PZ962570.1.seg1/PZ962571.1.seg2/PZ962572.1.seg3/PZ962573.1.seg4/PZ962574.1.seg5/PZ962575.1.seg6/PZ962576.1.seg7/PZ962577.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-16 05:05:11 UTC
Date released
2026-09-16 05:26:21 UTC
INSDC
bioprojectAccession
PRJNA967388
biosampleAccession
SAMN63036747
INSDC accession seg1
PZ962570.1
INSDC accession seg2
PZ962571.1
INSDC accession seg3
PZ962572.1
INSDC accession seg4
PZ962573.1
INSDC accession seg5
PZ962574.1
INSDC accession seg6
PZ962575.1
INSDC accession seg7
PZ962576.1
INSDC accession seg8
PZ962577.1
NCBI release date
2026-09-09
SRA run accession
SRR40592390
Clade
Clade HA
V1A.3a.2
Clade NA
B.7.1
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2026-08-05
Isolate name
B/California/LACPHL-INF02825/2026
INSDC seg4
lineage_seg4
vic
Alignment and QC
Length seg1
2263 (97%)
Total SNPs seg1
40
Length seg2
2313 (98.1%)
Total SNPs seg2
47
Length seg3
2181 (97.1%)
Total SNPs seg3
49
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
47
Length seg5
1683 (96.2%)
Total SNPs seg5
33
Length seg6
1401 (100%)
Total SNPs seg6
35
Length seg7
1139 (99.3%)
Total SNPs seg7
24
Length seg8
1034 (96.9%)
Total ambiguous nucs seg8
1
Total SNPs seg8
22
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg1
C
41
T
C
113
T
A
200
G
T
219
C
G
251
A
G
383
A
T
386
C
C
434
T
T
522
C
C
528
A
C
746
A
A
764
G
C
830
T
C
854
T
A
950
G
T
962
C
T
968
C
C
1037
T
Show more
seg2
G
12
A
A
54
G
G
81
A
A
117
G
T
171
C
T
240
C
T
300
A
T
330
C
C
342
T
A
405
G
G
441
A
G
447
A
G
477
T
C
513
T
A
576
G
T
586
C
A
594
G
A
705
G
Show more
seg3
T
111
C
C
117
T
T
339
C
C
345
T
G
414
A
T
423
C
G
549
A
C
616
A
A
618
G
T
654
C
A
771
G
C
813
T
G
867
A
G
888
A
C
897
T
A
935
G
G
936
A
A
987
G
Show more
seg4
T
159
C
C
252
A
C
270
T
G
297
A
G
312
T
A
318
G
C
375
T
C
378
T
A
427
G
C
441
T
C
453
T
G
457
A
G
460
A
A
463
G
A
484
G
C
509
T
T
510
C
C
528
A
Show more
seg5
T
46
C
C
178
T
A
224
G
A
235
G
T
298
C
C
313
T
G
340
A
G
361
A
A
373
G
C
380
T
G
435
A
A
454
G
C
516
A
C
523
T
C
608
T
A
634
G
A
724
G
T
742
C
Show more
seg6
T
9
C
C
125
A
T
155
C
T
212
C
C
225
T
C
318
A
A
358
G
C
394
T
C
399
T
C
429
T
A
504
G
C
519
T
A
557
G
A
660
C
T
714
A
C
849
T
T
879
C
T
885
G
Show more
seg7
C
33
T
C
46
T
A
83
G
T
125
A
A
377
G
A
419
G
G
482
A
G
500
T
T
515
C
G
521
A
A
524
G
G
536
A
C
542
T
A
566
G
C
656
T
G
668
A
A
919
G
G
924
A
Show more
seg8
A
118
G
C
124
T
T
163
C
G
190
A
T
341
C
A
352
C
T
391
C
T
400
C
C
419
T
A
426
G
C
462
T
C
604
T
A
610
T
C
632
T
G
661
A
G
685
A
T
775
C
C
882
T
Show more
Deletions
seg4
562-570
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
BM2
BM2:
S
59
N
BM2:
E
72
G
HA1
HA1:
I
117
V
HA1:
A
127
T
HA1:
E
128
K
HA1:
N
129
D
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
A
154
E
HA1:
G
184
E
HA1:
A
199
T
HA1:
K
203
R
HA1:
R
279
K
M1
M1:
T
15
I
NA
NA:
P
42
Q
NA:
L
52
S
NA:
V
71
A
NA:
I
120
V
NA:
K
186
R
NA:
K
220
N
NA:
S
295
R
NA:
N
340
D
NA:
K
343
E
NA:
E
358
K
NA:
G
378
E
NA:
D
384
G
NA:
A
395
I
NA:
V
401
I
NEP
NEP:
L
30
S
NEP:
S
93
P
NP
NP:
T
66
A
NP:
R
136
K
NP:
T
163
N
NP:
V
453
A
NS1
NS1:
Y
104
H
NS1:
K
107
N
NS1:
L
130
F
NS1:
D
132
G
NS1:
T
144
I
NS1:
H
201
Y
PA
PA:
Q
206
K
PA:
K
312
R
PA:
T
352
A
PA:
Y
458
F
PA:
S
530
T
PA:
S
547
G
PA:
F
709
I
PA:
N
714
S
PA:
I
723
V
PB1
PB1:
V
474
I
PB2
PB2:
X
303
I
PB2:
S
444
N
PB2:
I
492
T
PB2:
T
560
I
PB2:
X
582
E
Deletions
HA1
HA1:162-164
Insertions
N/A
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