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GSD_000MSG1.1

USA/GSD_000MSG1.1/2026-05-30
M. Kirby, R. Garten, T. Davis & V. Dugan

Centers for Disease Control and Prevention, Influenza Division

Submission details

Submission ID
PZ977544.1.seg3/PZ977542.1.seg4/PZ977539.1.seg5/PZ977545.1.seg6/PZ977543.1.seg7/PZ977538.1.seg8
Submitting group
Date submitted
2026-09-16 05:05:11 UTC
Date released
2026-09-16 05:27:22 UTC

INSDC

bioprojectAccession
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-09-10

Clade

Clade HA
V1A.3a.2
Clade NA
B.8

Sample details

Collection country
USA
Collection subdivision level 1
Hawaii
Collection date
2026-05-30
Isolate name
B/Hawaii/28/2026

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg3
2275 (100%)
Total inserted nucs seg3
30
Total SNPs seg3
58
Length seg4
1847 (98.5%)
Total deleted nucs seg4
9
Total SNPs seg4
59
Length seg5
1815 (100%)
Total inserted nucs seg5
65
Total SNPs seg5
35
Length seg6
1528 (100%)
Total inserted nucs seg6
127
Total SNPs seg6
36
Length seg7
1154 (100%)
Total inserted nucs seg7
7
Total SNPs seg7
15
Length seg8
1067 (99.6%)
Total inserted nucs seg8
5
Total SNPs seg8
19

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg3

  • T15C
  • T72C
  • T88C
  • T111C
  • C117T
  • T339C
  • G414A
  • T423C
  • G549A
  • A618G
  • A708G
  • A771G
  • C813T
  • T837C
  • G867A
  • C897T
  • A935G
  • G936A

seg4

  • G39A
  • C188T
  • C252A
  • C270T
  • C276A
  • G297A
  • G312T
  • A318G
  • A351G
  • C375T
  • C378T
  • A427G
  • A435G
  • C441T
  • T444C
  • T456C
  • G457A
  • A462T

seg5

  • C3T
  • T46C
  • A55G
  • A121G
  • C178T
  • A224G
  • A235G
  • G244A
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • A454G
  • C523T
  • C608T
  • A634G
  • G715T

seg6

  • T9C
  • C125A
  • T134C
  • T212C
  • A255G
  • A358G
  • C394T
  • C399T
  • A504G
  • C519T
  • C534T
  • A660C
  • T714A
  • A834C
  • C849T
  • A861T
  • T879C
  • T885G

seg7

  • C33T
  • C46T
  • A83G
  • T113C
  • T125A
  • G316A
  • A419G
  • G482A
  • G500T
  • G521A
  • G536A
  • A566G
  • C656T
  • A919G
  • A967G

seg8

  • G27A
  • A118G
  • T163C
  • G190A
  • A199G
  • T341C
  • A352C
  • T355C
  • G376A
  • T391C
  • C419T
  • C604T
  • A610T
  • C632T
  • G661A
  • T775C
  • C882T
  • A950G
  • T963C
Deletions

seg4

562-570
Insertions

seg3

ins_0:GTTTGATTTATCATA, ins_2241:AGAAAC, ins_2245:ATCAAAAAT

seg5

ins_0:ATTTTCTTGTTAACTCCA, ins_1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATATAAAAAAT

seg6

ins_0:ATCTTCTAAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_1401:TGGGGGAGTGGTTGAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTATCCTTACTAAACTTAATTGTTTCTGAAAAAT

seg7

ins_0:TCTTA, ins_1147:AA

seg8

ins_25:A, ins_1066:TAAA

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:T37I
  • HA1:I117V
  • HA1:A127T
  • HA1:E128D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:G184E
  • HA1:N197E
  • HA1:K203R
  • HA1:P241Q
  • HA1:R279K

M1

  • M1:T15I
  • M1:R105K

NA

  • NA:P42Q
  • NA:I45T
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:D384G
  • NA:A395I
  • NA:S397N
  • NA:V401I
  • NA:K404R

NEP

  • NEP:L30S
  • NEP:S93P

NP

  • NP:I9M
  • NP:T66A
  • NP:V453A

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:H201Y

PA

  • PA:K312R
  • PA:M326T
  • PA:T352A
  • PA:S530T
  • PA:F709V
  • PA:N714S
  • PA:I723V
Deletions

HA1

HA1:162-164
Insertions
N/A