Warning: Development or Keycloak main database is enabled. Development environment only.

GSD_000MXNH.1

USA/GSD_000MXNH.1/2026-07-06
M. Kirby, R. Garten, T. Davis & V. Dugan

Centers for Disease Control and Prevention, Influenza Division

Submission details

Submission ID
PZ978950.1.seg1/PZ978952.1.seg2/PZ978953.1.seg3/PZ978951.1.seg4/PZ978956.1.seg5/PZ978957.1.seg6/PZ978954.1.seg7/PZ978955.1.seg8
Submitting group
Date submitted
2026-09-16 05:05:11 UTC
Date released
2026-09-16 05:27:22 UTC

INSDC

bioprojectAccession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-09-10

Clade

Clade HA
V1A.3a.2
Clade NA
B.8

Sample details

Collection country
USA
Collection subdivision level 1
Oklahoma
Collection date
2026-07-06
Isolate name
B/Oklahoma/30/2026

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg1
2340 (100%)
Total ambiguous nucs seg1
1
Total inserted nucs seg1
6
Total SNPs seg1
48
Length seg2
2367 (100%)
Total inserted nucs seg2
9
Total SNPs seg2
54
Length seg3
2275 (100%)
Total inserted nucs seg3
30
Total SNPs seg3
54
Length seg4
1847 (98.4%)
Total ambiguous nucs seg4
1
Total deleted nucs seg4
9
Total SNPs seg4
62
Length seg5
1815 (100%)
Total inserted nucs seg5
65
Total SNPs seg5
36
Length seg6
1528 (99.9%)
Total ambiguous nucs seg6
1
Total inserted nucs seg6
127
Total SNPs seg6
36
Length seg7
1154 (100%)
Total inserted nucs seg7
7
Total SNPs seg7
15
Length seg8
1066 (99.6%)
Total inserted nucs seg8
4
Total SNPs seg8
22

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C26T
  • C113T
  • G197A
  • A200G
  • A359G
  • G383A
  • C434T
  • T522C
  • A671G
  • C746A
  • A827G
  • C854T
  • T938C
  • A950G
  • T962C
  • T968C
  • T995C
  • G1064A

seg2

  • G12A
  • G39A
  • A54G
  • G81A
  • T171C
  • T174C
  • T240C
  • T300A
  • T330C
  • C342T
  • A405G
  • G441A
  • G447A
  • G510A
  • C513T
  • A576G
  • A594G
  • A705G

seg3

  • T88C
  • T111C
  • C117T
  • T339C
  • G414A
  • T423C
  • G549A
  • A618G
  • A624G
  • T654C
  • A771G
  • C773A
  • C813T
  • A828G
  • G867A
  • C897T
  • G906A
  • A935G

seg4

  • G39A
  • C188T
  • C252A
  • C270T
  • C276A
  • G297A
  • G312T
  • A318G
  • A351G
  • C375T
  • C378T
  • A427G
  • A435G
  • C441T
  • T444C
  • T456C
  • G457A
  • A462T

seg5

  • C3T
  • T46C
  • A55G
  • A121G
  • C178T
  • A224G
  • A235G
  • G244A
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • A454G
  • C523T
  • T532C
  • C608T
  • A634G

seg6

  • T9C
  • C125A
  • T134C
  • G194A
  • T212C
  • A358G
  • C394T
  • C399T
  • A504G
  • C519T
  • C534T
  • A660C
  • T714A
  • C849T
  • A853G
  • T879C
  • T885G
  • A912G

seg7

  • C33T
  • C46T
  • A83G
  • T113C
  • T125A
  • G316A
  • A419G
  • G482A
  • G500T
  • G521A
  • G536A
  • A566G
  • C656T
  • A919G
  • A967G

seg8

  • G6A
  • G26A
  • A118G
  • T163C
  • T166C
  • G190A
  • T341C
  • A352C
  • T355C
  • C358A
  • T391C
  • C419T
  • C604T
  • A610T
  • C632T
  • G661A
  • T775C
  • C882T
Deletions

seg4

562-570
Insertions

seg1

ins_0:CTTTA, ins_2334:G

seg2

ins_0:GTTTTC, ins_2358:AAT

seg3

ins_0:GTTTGATTTATCATA, ins_2241:AGAAAC, ins_2245:ATCAAAAAT

seg5

ins_0:ATTTTCTTGTGAACTCCA, ins_1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATATAAAAAAT

seg6

ins_0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTATCCTTACTAAACTTAACTATTTCTGAAAAAT

seg7

ins_0:TCTTA, ins_1147:AA

seg8

ins_1066:TAAA

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:T37I
  • HA1:I117V
  • HA1:A127T
  • HA1:E128D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:G184E
  • HA1:N197E
  • HA1:K203R
  • HA1:P241Q
  • HA1:R279K

M1

  • M1:T15I
  • M1:R105K

NA

  • NA:P42Q
  • NA:I45T
  • NA:R65H
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:K285E
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:G346R
  • NA:E358K
  • NA:D384G
  • NA:A395V
  • NA:S397K
  • NA:V401I

NEP

  • NEP:L30S
  • NEP:S93P

NP

  • NP:I9M
  • NP:T66A
  • NP:V453A

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:H201Y

PA

  • PA:I208M
  • PA:T258K
  • PA:K312R
  • PA:T352A
  • PA:S530T
  • PA:F709I
  • PA:N714S
  • PA:I723V

PB1

  • PB1:M65I
  • PB1:V474I
  • PB1:L683F

PB2

  • PB2:X303I
  • PB2:I492T
  • PB2:X582E
Deletions

HA1

HA1:162-164
Insertions
N/A