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GSD_000MYXY.1

USA/GSD_000MYXY.1/2026-05-26
M. Kirby, R. Garten, T. Davis & V. Dugan

Centers for Disease Control and Prevention, Influenza Division

Submission details

Submission ID
PZ979299.1.seg1/PZ979300.1.seg2/PZ979298.1.seg3/PZ979294.1.seg4/PZ979301.1.seg5/PZ979297.1.seg6/PZ979295.1.seg7/PZ979296.1.seg8
Submitting group
Date submitted
2026-09-16 05:05:11 UTC
Date released
2026-09-16 05:27:22 UTC

INSDC

bioprojectAccession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-09-10

Clade

Clade HA
V1A.3a.2
Clade NA
B.7.1

Sample details

Collection country
USA
Collection subdivision level 1
Wisconsin
Collection date
2026-05-26
Isolate name
B/Wisconsin/52/2026

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg1
2340 (100%)
Total inserted nucs seg1
6
Total SNPs seg1
38
Length seg2
2367 (100%)
Total inserted nucs seg2
9
Total SNPs seg2
46
Length seg3
2275 (100%)
Total ambiguous nucs seg3
1
Total inserted nucs seg3
30
Total SNPs seg3
49
Length seg4
1847 (98.5%)
Total deleted nucs seg4
9
Total SNPs seg4
50
Length seg5
1815 (100%)
Total inserted nucs seg5
65
Total SNPs seg5
34
Length seg6
1528 (100%)
Total inserted nucs seg6
127
Total SNPs seg6
35
Length seg7
1154 (100%)
Total inserted nucs seg7
7
Total SNPs seg7
23
Length seg8
1067 (99.6%)
Total inserted nucs seg8
5
Total SNPs seg8
21

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C113T
  • A200G
  • T219C
  • G251A
  • G383A
  • T386C
  • C434T
  • T522C
  • C528A
  • C746A
  • A764G
  • C830T
  • C854T
  • A950G
  • T962C
  • T968C
  • C1037T
  • G1064A

seg2

  • G12A
  • A54G
  • G81A
  • T171C
  • T240C
  • A246T
  • T300A
  • T330C
  • C342T
  • A405G
  • G441A
  • G447A
  • C461T
  • C513T
  • A576G
  • T586C
  • A594G
  • A705G

seg3

  • T111C
  • C117T
  • T339C
  • G414A
  • T423C
  • G549A
  • A618G
  • T654C
  • A771G
  • T807C
  • C813T
  • G867A
  • G888A
  • C897T
  • A935G
  • G936A
  • A987G
  • C1006T

seg4

  • T62C
  • T159C
  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • C375T
  • C378T
  • A427G
  • C441T
  • T444C
  • C453T
  • G457A
  • G460A
  • A463G
  • A484G
  • C509T

seg5

  • C3T
  • A22G
  • T46C
  • C178T
  • A224G
  • A235G
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • A454G
  • C520T
  • C523T
  • C608T
  • A634G
  • T742C
  • A763G

seg6

  • T9C
  • C125A
  • T155C
  • T212C
  • C318A
  • A321G
  • A358G
  • C394T
  • C399T
  • C429T
  • A504G
  • C519T
  • A557G
  • A660C
  • T714A
  • C849T
  • T879C
  • T885G

seg7

  • C33T
  • C46T
  • A83G
  • T125A
  • C128T
  • A377G
  • A419G
  • C479A
  • G482A
  • G500T
  • T515C
  • G521A
  • A524G
  • G536A
  • C542T
  • A566G
  • C656T
  • G668A

seg8

  • G27A
  • A118G
  • T163C
  • G190A
  • T341C
  • A352C
  • T391C
  • T400C
  • C419T
  • A426G
  • C604T
  • A610T
  • C632T
  • G661A
  • G685A
  • T775C
  • C882T
  • A950G
Deletions

seg4

562-570
Insertions

seg1

ins_0:CTTTG, ins_2334:G

seg2

ins_0:GTTTTC, ins_2358:AAT

seg3

ins_0:GTTTGATTTATCACA, ins_2241:AGAAAC, ins_2245:ATCAAAAAT

seg5

ins_0:ATTTTCTTGTAAACTCCA, ins_1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATATAAAAAAT

seg6

ins_0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_1401:TGGGGAAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTGTCCTTACTAAACTTAATTGTTTCTGAAAAAT

seg7

ins_0:TCTTA, ins_1147:AA

seg8

ins_25:A, ins_1066:TAAA

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

BM2

  • BM2:I87V

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

M1

  • M1:T15I
  • M1:H159Q

NA

  • NA:P42Q
  • NA:L52S
  • NA:V71A
  • NA:I120V
  • NA:K186R
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:G378E
  • NA:D384G
  • NA:A395I
  • NA:V401I
  • NA:I445V

NEP

  • NEP:L30S
  • NEP:S93P
  • NEP:V115I

NP

  • NP:T66A
  • NP:V453A

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:D132G
  • NS1:H201Y

PA

  • PA:K312R
  • PA:T352A
  • PA:Y361H
  • PA:Y458F
  • PA:S530T
  • PA:S547G
  • PA:F709I
  • PA:N714S
  • PA:I723V

PB1

  • PB1:V474I

PB2

  • PB2:T153I
  • PB2:X303I
  • PB2:I492T
  • PB2:X582E

SigPep

  • SigPep:V10A
Deletions

HA1

HA1:162-164
Insertions
N/A