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GSD_00116DZ.1
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China/GSD_00116DZ.1/2024-10-18
Y. Feng,
H. Zhong,
M. Jiang &
W. Li
Sichuan Center for Disease Control and Prevention, Institute of Microbiological Detection and Analyses
Submission details
Submission ID
PV571635.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 09:54:35 UTC
Date released
2026-03-16 10:22:23 UTC
Clade & Lineage
Clade
2II_F.1.1
Sample details
Collection country
China
Collection subdivision level 1
Sichuan
Collection date
2024-10-18
Isolate name
SCDen24-23
Host
Host
Homo sapiens
INSDC
INSDC accession
PV571635.1
NCBI release date
2025-05-03
NCBI update date
2025-05-03
Alignment and QC
Length
10540 (98.3%)
Total SNPs
827
Nucleotide mutations
Mutations called relative to the
NC_001474.2
reference
Substitutions
G
44
A
C
54
T
A
122
G
C
126
T
C
150
T
G
168
A
A
177
G
G
210
A
T
226
C
A
228
G
G
249
A
G
252
A
A
276
G
G
294
A
G
297
A
T
312
C
A
324
G
T
330
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_001474.2
reference
Substitutions
C
C:
K
9
R
C:
S
101
T
C:
M
104
I
C:
L
108
M
E
E:
M
6
I
E:
S
7
A
E:
Q
52
H
E:
E
71
A
E:
R
120
T
E:
V
129
I
E:
H
149
N
E:
I
164
V
E:
I
335
V
E:
N
390
S
E:
I
462
V
E:
T
478
S
E:
I
484
V
NS1
NS1:
S
80
T
NS1:
T
117
A
NS1:
M
123
I
NS1:
S
128
L
NS1:
Q
131
H
NS1:
K
174
R
NS1:
F
178
S
NS1:
N
222
S
NS1:
L
247
F
NS1:
I
264
T
NS1:
T
265
A
NS1:
K
272
R
NS1:
D
281
E
NS2A
NS2A:
V
5
I
NS2A:
V
12
I
NS2A:
K
82
R
NS2A:
M
136
I
NS2A:
I
171
A
NS2B
NS2B:
L
21
F
NS2B:
V
59
I
NS2B:
K
60
R
NS2B:
D
63
E
NS3
NS3:
M
13
V
NS3:
K
15
R
NS3:
A
120
T
NS3:
I
140
V
NS3:
A
160
T
NS3:
R
186
K
NS3:
V
273
I
NS3:
I
333
M
NS3:
V
395
I
NS3:
I
461
V
NS4A
NS4A:
D
23
N
NS4A:
R
76
K
NS4A:
I
89
V
NS4B
NS4B:
L
13
F
NS4B:
A
19
T
NS4B:
V
48
I
NS4B:
F
112
L
NS4B:
T
244
A
NS5
NS5:
I
5
T
NS5:
S
15
N
NS5:
M
70
L
NS5:
R
98
K
NS5:
I
135
T
NS5:
Y
247
H
NS5:
I
271
K
NS5:
V
335
I
NS5:
K
388
E
NS5:
K
437
R
NS5:
K
570
R
NS5:
G
605
V
NS5:
I
637
A
NS5:
Q
644
K
NS5:
A
648
V
NS5:
S
676
N
NS5:
I
687
V
NS5:
K
800
T
NS5:
A
865
T
prM
prM:
D
29
N
prM:
K
52
N
prM:
T
82
A
prM:
M
83
T
prM:
V
120
A
prM:
I
127
V
prM:
M
135
I
prM:
H
148
Y
prM:
A
152
V
prM:
T
162
A
Deletions
N/A
Insertions
N/A
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