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GSD_0011JCP.1

India/GSD_0011JCP.1/2025-02-21
H. Sivakumar, F. S. Philomenadin, N. Devanathan & R. Dhodapkar

JIPMER, Dept of Microbiology

Submission details

Submission ID
PX460871.1
Submitting group
Date submitted
2026-03-16 09:54:35 UTC
Date released
2026-03-16 10:23:23 UTC

Clade & Lineage

Clade
2II_F.1.1

Sample details

Collection country
India
Collection subdivision level 1
Puducherry
Collection date
2025-02-21
Isolate name
FEB-1626

Host

Host

INSDC

INSDC accession
NCBI release date
2025-10-21
NCBI update date
2025-10-21

Alignment and QC

Length
504 (4.7%)
Total SNPs
37

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

  • A152T
  • G168A
  • A177G
  • G210A
  • T226C
  • A228G
  • G252A
  • A276G
  • G294A
  • G297A
  • T312C
  • A324G
  • T330C
  • T336C
  • G372T
  • T384C
  • T397A
  • C405T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

C

  • C:E19V
  • C:S101T
  • C:M104I
  • C:L108M

prM

  • prM:D29N
  • prM:L41R
  • prM:E43A
  • prM:L44M
  • prM:K52N
Deletions
N/A
Insertions
N/A