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GSD_0019UJJ.1
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China/GSD_0019UJJ.1/2024-09-30
Y. Feng,
H. Zhong,
M. Jiang &
W. Li
Sichuan Center for Disease Control and Prevention, Institute of Microbiological Detection and Analyses
Submission details
Submission ID
PV571623.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 09:54:37 UTC
Date released
2026-03-16 10:22:23 UTC
Clade & Lineage
Clade
1I_K.2
Sample details
Collection country
China
Collection subdivision level 1
Sichuan
Collection date
2024-09-30
Isolate name
SCDen24-6
Host
Host
Homo sapiens
INSDC
INSDC accession
PV571623.1
NCBI release date
2025-05-03
NCBI update date
2025-05-03
Alignment and QC
Length
10589 (98.6%)
Total SNPs
781
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
A
65
G
G
109
A
G
120
C
T
173
C
T
208
C
T
230
C
T
244
C
T
274
C
T
335
C
A
363
G
C
373
T
C
382
T
G
385
A
C
412
T
C
419
A
C
424
T
C
431
T
G
436
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
C
C:
G
9
A
C:
S
27
P
C:
N
90
S
C:
L
109
M
E
E:
N
8
S
E:
T
81
A
E:
T
88
A
E:
D
147
N
E:
T
155
S
E:
T
156
I
E:
S
171
T
E:
K
203
E
E:
I
293
T
E:
V
324
I
E:
S
338
L
E:
S
339
T
E:
V
380
I
E:
I
436
V
E:
I
461
V
E:
V
482
I
E:
M
484
L
NS1
NS1:
S
94
A
NS1:
N
146
D
NS1:
N
293
S
NS1:
T
307
I
NS1:
K
324
R
NS2A
NS2A:
A
38
V
NS2A:
L
41
F
NS2A:
T
44
I
NS2A:
K
67
R
NS2A:
R
82
K
NS2A:
V
106
I
NS2A:
M
133
I
NS2A:
V
155
I
NS2A:
I
171
V
NS2A:
T
210
A
NS2B
NS2B:
M
112
L
NS3
NS3:
L
26
M
NS3:
G
44
N
NS3:
F
85
L
NS3:
A
91
T
NS3:
V
221
I
NS3:
A
293
S
NS3:
D
350
E
NS3:
V
384
I
NS3:
Q
466
H
NS4A
NS4A:
K
39
R
NS4A:
I
89
M
NS4A:
A
93
V
NS4B
NS4B:
A
18
V
NS4B:
A
20
V
NS4B:
A
27
T
NS5
NS5:
I
34
M
NS5:
T
135
I
NS5:
N
285
H
NS5:
R
325
K
NS5:
V
413
I
NS5:
T
565
K
NS5:
S
566
A
NS5:
G
626
R
NS5:
T
635
N
NS5:
K
647
E
NS5:
H
649
Y
NS5:
T
651
V
NS5:
V
829
I
NS5:
F
881
Y
NS5:
T
883
I
NS5:
P
894
S
prM
prM:
T
57
N
prM:
T
59
A
prM:
E
72
D
prM:
K
122
R
Deletions
N/A
Insertions
N/A
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