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GSD_0019V1J.1
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China/GSD_0019V1J.1/2024-10-12
Y. Feng,
H. Zhong,
M. Jiang &
W. Li
Sichuan Center for Disease Control and Prevention, Institute of Microbiological Detection and Analyses
Submission details
Submission ID
PV571653.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 09:54:37 UTC
Date released
2026-03-16 10:22:23 UTC
Clade & Lineage
Clade
1I_E.1
Sample details
Collection country
China
Collection subdivision level 1
Sichuan
Collection date
2024-10-12
Isolate name
SCDen24-68
Host
Host
Homo sapiens
INSDC
INSDC accession
PV571653.1
NCBI release date
2025-05-03
NCBI update date
2025-05-03
Alignment and QC
Length
10671 (99.4%)
Total SNPs
785
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
A
86
G
G
120
C
T
244
C
A
318
G
T
335
C
T
343
C
T
368
C
C
373
T
C
382
T
G
385
A
C
409
T
C
419
A
C
424
T
C
431
T
C
443
T
C
448
T
C
451
A
T
478
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
C
C:
G
9
A
C:
N
75
S
C:
L
109
M
E
E:
N
8
S
E:
N
52
D
E:
T
88
A
E:
T
155
S
E:
S
171
T
E:
K
203
E
E:
I
293
T
E:
V
312
L
E:
V
324
I
E:
S
339
T
E:
V
380
I
E:
I
436
V
E:
I
461
V
E:
M
484
L
E:
V
485
I
NS1
NS1:
S
94
A
NS1:
H
111
Y
NS1:
N
146
D
NS1:
T
307
I
NS1:
K
324
R
NS2A
NS2A:
A
38
V
NS2A:
L
41
F
NS2A:
T
44
I
NS2A:
K
67
R
NS2A:
R
82
K
NS2A:
V
106
I
NS2A:
M
133
I
NS2A:
V
155
I
NS2A:
I
171
V
NS2A:
T
210
A
NS2B
NS2B:
I
106
V
NS2B:
M
112
L
NS3
NS3:
L
26
M
NS3:
G
44
N
NS3:
F
85
L
NS3:
A
91
T
NS3:
V
221
I
NS3:
A
293
S
NS3:
D
350
E
NS3:
V
384
I
NS3:
Q
466
H
NS4A
NS4A:
K
39
R
NS4A:
R
76
K
NS4A:
I
89
M
NS4A:
A
93
V
NS4A:
M
97
V
NS4B
NS4B:
A
18
V
NS4B:
A
20
V
NS5
NS5:
I
34
M
NS5:
T
135
I
NS5:
H
200
Y
NS5:
N
285
H
NS5:
R
325
K
NS5:
R
378
K
NS5:
K
551
R
NS5:
T
565
K
NS5:
K
647
E
NS5:
H
649
Y
NS5:
T
651
V
NS5:
V
787
I
NS5:
V
829
I
NS5:
E
833
G
NS5:
F
881
Y
prM
prM:
E
72
D
prM:
I
120
V
prM:
K
122
R
prM:
I
136
M
Deletions
N/A
Insertions
N/A
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