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GSD_0019V84.1
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China/GSD_0019V84.1/2024-10-23
Y. Feng,
H. Zhong,
M. Jiang &
W. Li
Sichuan Center for Disease Control and Prevention, Institute of Microbiological Detection and Analyses
Submission details
Submission ID
PV571662.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 09:54:37 UTC
Date released
2026-03-16 10:22:23 UTC
Clade & Lineage
Clade
1IV_B.2
Sample details
Collection country
China
Collection subdivision level 1
Sichuan
Collection date
2024-10-23
Isolate name
SCDen24-92
Host
Host
Homo sapiens
INSDC
INSDC accession
PV571662.1
NCBI release date
2025-05-03
NCBI update date
2025-05-03
Alignment and QC
Length
10583 (98.6%)
Total SNPs
368
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
G
302
A
A
355
G
A
390
G
C
412
T
G
433
A
C
439
T
T
442
C
A
454
G
G
457
A
C
538
T
C
599
A
A
616
G
C
712
T
A
733
G
T
742
C
A
789
G
C
811
T
C
865
T
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Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
C
C:
G
70
S
C:
K
99
R
E
E:
V
139
I
E:
K
203
E
E:
I
293
T
E:
M
297
V
E:
I
378
L
E:
L
462
M
NS1
NS1:
S
94
N
NS1:
I
123
V
NS1:
N
146
D
NS1:
A
213
T
NS1:
I
246
T
NS1:
D
278
G
NS1:
T
307
I
NS2A
NS2A:
T
148
A
NS2A:
F
159
L
NS2A:
V
175
I
NS2A:
L
182
M
NS3
NS3:
R
33
K
NS3:
A
91
T
NS3:
V
323
M
NS3:
V
332
A
NS3:
V
384
I
NS3:
D
437
E
NS4A
NS4A:
I
89
M
NS4B
NS4B:
A
18
V
NS4B:
N
22
S
NS5
NS5:
I
34
M
NS5:
I
181
V
NS5:
A
245
T
NS5:
R
253
K
NS5:
S
629
L
NS5:
A
639
G
NS5:
K
647
E
NS5:
F
881
Y
prM
prM:
K
118
R
Deletions
N/A
Insertions
N/A
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