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Dengue 1
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GSD_001A79N.1
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USA/GSD_001A79N.1/2024-11-12
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Submission details
Submission ID
PQ868290.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-22 05:02:22 UTC
Date released
2026-04-22 05:30:06 UTC
Clade & Lineage
Clade
1IV_B.1
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2024-11-12
Isolate name
hDenV1/USA/CA-LACPHL-DA00043/2024
Host
Host
Homo sapiens
INSDC
INSDC accession
PQ868290.1
NCBI release date
2025-01-18
NCBI update date
2025-01-18
Alignment and QC
Length
10575 (98.4%)
Total ambiguous nucs
17
Total SNPs
377
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
G
302
A
T
343
A
C
346
T
A
355
G
G
433
A
C
439
T
T
442
C
C
451
T
A
454
G
G
457
A
C
522
T
C
538
T
C
599
A
A
616
G
A
691
G
C
719
T
T
742
C
C
781
T
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Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_001477.1
reference
Substitutions
C
C:
G
70
S
E
E:
F
96
L
E:
K
203
E
E:
I
293
T
E:
M
297
V
E:
I
378
L
NS1
NS1:
S
94
N
NS1:
I
123
V
NS1:
T
131
S
NS1:
N
146
D
NS1:
A
213
T
NS1:
I
224
V
NS1:
D
278
G
NS1:
T
307
I
NS2A
NS2A:
T
44
I
NS2A:
M
86
T
NS2A:
T
148
A
NS3
NS3:
E
12
K
NS3:
R
15
K
NS3:
R
33
K
NS3:
A
91
T
NS3:
V
323
M
NS3:
V
332
T
NS3:
N
379
S
NS4A
NS4A:
I
89
M
NS4B
NS4B:
A
18
V
NS4B:
N
22
S
NS5
NS5:
I
181
V
NS5:
S
629
L
NS5:
K
647
E
NS5:
H
649
Y
NS5:
T
651
I
NS5:
F
881
Y
prM
prM:
A
29
V
prM:
K
118
R
prM:
K
122
R
Deletions
N/A
Insertions
N/A
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