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GSD_001JXKU.1

USA/GSD_001JXKU.1/2026-07-08
R. Naseer & P. Gauger

Iowa State University Veterinary Diagnostic Lab, Bioinformatics

Submission details

Submission ID
PZ740846.1.seg4/PZ740847.1.seg6
Submitting group
Date submitted
2026-08-03 12:47:35 UTC
Date released
2026-08-03 13:37:10 UTC

Clade

Clade HA
unassigned

Sample details

Collection country
USA
Collection subdivision level 1
North_Carolina
Collection date
2026-07-08
Isolate name
A/swine/North_Carolina/A03690723/2026

INSDC

INSDC accession seg4
INSDC accession seg6
NCBI release date
2026-07-24

INSDC seg4

subtype_seg4
H1

INSDC seg6

subtype_seg6
N1

Alignment and QC

Length seg4
1701 (97.1%)
Total SNPs seg4
178
Length seg6
1410

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg4

  • T41C
  • A49G
  • G57T
  • C61A
  • C62A
  • C64T
  • A86C
  • T95C
  • G98A
  • A110T
  • T161C
  • C164T
  • G174A
  • A175G
  • C185T
  • C215T
  • T224C
  • T245C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

HA1

  • HA1:D35S
  • HA1:I61L
  • HA1:A73T
  • HA1:S74R
  • HA1:P83S
  • HA1:S84K
  • HA1:D86E
  • HA1:D97N
  • HA1:S128T
  • HA1:A141T
  • HA1:K142N
  • HA1:K146R
  • HA1:K153Q
  • HA1:L161I
  • HA1:S162N
  • HA1:G170E
  • HA1:K171R
  • HA1:G178A

HA2

  • HA2:V18I
  • HA2:E47G
  • HA2:T64A
  • HA2:N71S
  • HA2:K75R
  • HA2:N146D
  • HA2:T147M
  • HA2:V152I
  • HA2:A166S
  • HA2:I183V
  • HA2:V200I

SigPep

  • SigPep:Y10C
  • SigPep:A13S
  • SigPep:T14K
  • SigPep:A15V
Deletions
N/A
Insertions
N/A