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GenSpectrum
Organisms
Influenza B/Victoria
GenSpectrum
Organisms
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
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Influenza B/Victoria
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Browse data
GSD_002CJHP.1
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USA/GSD_002CJHP.1/2026-01-22
A. Rothstein,
G. Muir,
A. Sum,
A. Simas,
B. Lu,
B. Girinathan,
H. Mammadova,
P. Leeson,
A. Plocik &
D. Gratalo
Ginkgo Biosecurity
Submission details
Submission ID
PX990911.1.seg4/PX990913.1.seg5/PX990912.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 09:57:14 UTC
Date released
2026-03-16 10:41:01 UTC
INSDC
Bioproject accession
PRJNA989177
INSDC accession seg4
PX990911.1
INSDC accession seg5
PX990913.1
INSDC accession seg6
PX990912.1
NCBI release date
2026-02-11
Clade
Clade HA
V1A.3a.2
Clade NA
B.8
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2026-01-22
Isolate name
B/California/GKISBBBI12807/2026
Host
Host
Homo sapiens
INSDC seg4
Lineage seg4
vic
Alignment and QC
Length seg4
1847 (98.5%)
Total deleted nucs seg4
9
Total SNPs seg4
59
Length seg5
1815 (100%)
Total inserted nucs seg5
65
Total SNPs seg5
34
Length seg6
1528 (100%)
Total inserted nucs seg6
127
Total SNPs seg6
36
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg4
G
39
A
C
188
T
C
252
A
C
270
T
C
276
A
G
297
A
G
312
T
A
318
G
A
351
G
C
375
T
C
378
T
A
427
G
A
435
G
C
441
T
T
444
C
T
456
C
G
457
A
A
462
T
Show more
seg5
C
3
T
T
46
C
A
55
G
A
121
G
C
178
T
A
224
G
A
235
G
G
244
A
T
298
C
C
313
T
G
361
A
A
373
G
C
380
T
A
454
G
C
523
T
C
608
T
A
634
G
G
715
T
Show more
seg6
T
9
C
C
125
A
T
134
C
T
154
A
C
200
T
A
202
G
T
212
C
A
358
G
C
394
T
C
399
T
A
480
G
A
504
G
C
519
T
C
534
T
A
660
C
T
714
A
A
804
G
C
849
T
Show more
Deletions
seg4
562-570
Insertions
seg5
ins_0:ATTTTCTTGTGAACTCCA, ins_1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATATAAAAAAT
seg6
ins_0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCTTATTTTATTTGAACAATTATCCTTACTAAACTTAATTGTTTCTGAAAAAT
Amino acid mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
HA1
HA1:
T
37
I
HA1:
I
117
V
HA1:
A
127
T
HA1:
E
128
D
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
G
184
E
HA1:
N
197
E
HA1:
A
202
V
HA1:
K
203
R
HA1:
R
279
K
NA
NA:
P
42
Q
NA:
I
45
T
NA:
L
52
M
NA:
A
67
V
NA:
T
68
A
NA:
V
71
A
NA:
I
120
V
NA:
K
220
N
NA:
S
295
R
NA:
N
340
D
NA:
K
343
E
NA:
E
358
K
NA:
D
384
G
NA:
A
395
V
NA:
S
397
N
NA:
V
399
I
NA:
V
401
I
NA:
K
404
R
NP
NP:
I
9
M
NP:
T
66
A
NP:
V
453
A
Deletions
HA1
HA1:162-164
Insertions
N/A
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