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GSD_002CJQ9.1

USA/GSD_002CJQ9.1/2026-01-27
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Lu, B. Girinathan, H. Mammadova, P. Leeson, A. Plocik & D. Gratalo

Ginkgo Biosecurity

Submission details

Submission ID
PZ019808.1.seg3/PZ019804.1.seg4/PZ019807.1.seg5/PZ019806.1.seg6/PZ019805.1.seg7
Submitting group
Date submitted
2026-03-16 09:57:14 UTC
Date released
2026-03-16 10:41:01 UTC

INSDC

Bioproject accession
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
NCBI release date
2026-02-19

Clade

Clade HA
V1A.3a.2
Clade NA
B.8

Sample details

Collection country
USA
Collection subdivision level 1
Washington
Collection date
2026-01-27
Isolate name
B/Washington/GKISBBBH52759/2026

Host

Host

INSDC seg4

Lineage seg4
vic

Alignment and QC

Length seg3
2291 (100%)
Total inserted nucs seg3
46
Total SNPs seg3
50
Length seg4
1847 (98.5%)
Total deleted nucs seg4
9
Total SNPs seg4
55
Length seg5
1829 (100%)
Total inserted nucs seg5
79
Total SNPs seg5
30
Length seg6
1529 (100%)
Total inserted nucs seg6
128
Total SNPs seg6
34
Length seg7
1160 (100%)
Total inserted nucs seg7
13
Total SNPs seg7
16

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg3

  • T111C
  • C117T
  • C216T
  • T339C
  • A411G
  • G414A
  • T423C
  • A525C
  • G549A
  • A618G
  • T654C
  • A665G
  • A771G
  • A789G
  • C813T
  • G867A
  • C897T
  • C928T

seg4

  • C111T
  • T159C
  • C252A
  • C270T
  • G297A
  • A302G
  • G312T
  • A318G
  • C375T
  • C378T
  • A427G
  • C441T
  • T444C
  • G457A
  • G460A
  • A463G
  • A484G
  • C509T

seg5

  • C3T
  • T9C
  • T46C
  • A55G
  • C178T
  • A224G
  • G244T
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • A454G
  • C523T
  • C608T
  • A634G
  • A763G
  • C841T

seg6

  • T9C
  • C125A
  • T134C
  • G194A
  • T212C
  • C309T
  • A358G
  • C394T
  • C399T
  • A504G
  • C519T
  • C534T
  • A639G
  • A660C
  • T714A
  • C849T
  • T879C
  • T885G

seg7

  • C33T
  • C46T
  • A83G
  • T125A
  • C146T
  • G316A
  • A419G
  • G482A
  • G500T
  • G521A
  • G536A
  • A566G
  • C656T
  • A919G
  • A967G
  • T1086C
Deletions

seg4

562-570
Insertions

seg3

ins_0:GCGTTTGATTTGTCATA, ins_2241:AGAAAC, ins_2245:ATCAAAAATGCTCGTGTTTCTAC

seg5

ins_0:ATTTTCTTGTGAACTCCA, ins_1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATACAAAAAATGCTGTTGTTTCTAC

seg6

ins_0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAAATGAACA, ins_1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTATCCTTACTAAACTTAATTGTTTCTGAAAAAT

seg7

ins_0:GCACTTTCTTA, ins_1147:AA

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:K75R
  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:S208P
  • HA1:S255P
  • HA1:I267V
  • HA1:R279K

M1

  • M1:T15I
  • M1:R105K

NA

  • NA:P42Q
  • NA:I45T
  • NA:R65H
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:D384G
  • NA:A395V
  • NA:S397K
  • NA:V401I

NP

  • NP:I9M
  • NP:T66A
  • NP:V453A

PA

  • PA:N222S
  • PA:K312R
  • PA:T352A
  • PA:S530T
  • PA:G708A
  • PA:F709I
  • PA:N714S
  • PA:I723V
Deletions

HA1

HA1:162-164
Insertions
N/A