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GSD_002CJR7.1

USA/GSD_002CJR7.1/2026-01-26
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Lu, B. Girinathan, H. Mammadova, P. Leeson, A. Plocik & D. Gratalo

Ginkgo Biosecurity

Submission details

Submission ID
PZ019815.1.seg1/PZ019816.1.seg2/PZ019814.1.seg3/PZ019809.1.seg4/PZ019812.1.seg5/PZ019811.1.seg6/PZ019810.1.seg7/PZ019813.1.seg8
Submitting group
Date submitted
2026-03-16 09:57:14 UTC
Date released
2026-03-16 10:41:01 UTC

INSDC

Bioproject accession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-02-19

Clade

Clade HA
V1A.3a.2
Clade NA
B.8

Sample details

Collection country
USA
Collection subdivision level 1
California
Collection date
2026-01-26
Isolate name
B/California/GKISBBBI32265/2026

Host

Host

INSDC seg4

Lineage seg4
vic

Alignment and QC

Length seg1
2342 (100%)
Total inserted nucs seg1
8
Total SNPs seg1
47
Length seg2
2367 (100%)
Total inserted nucs seg2
9
Total SNPs seg2
55
Length seg3
2274 (100%)
Total inserted nucs seg3
29
Total SNPs seg3
50
Length seg4
1843 (98.2%)
Total deleted nucs seg4
9
Total SNPs seg4
56
Length seg5
1815 (100%)
Total inserted nucs seg5
65
Total SNPs seg5
34
Length seg6
1528 (100%)
Total inserted nucs seg6
127
Total SNPs seg6
34
Length seg7
1154 (100%)
Total inserted nucs seg7
7
Total SNPs seg7
16
Length seg8
1052 (98.7%)
Total SNPs seg8
22

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C113T
  • G197A
  • A200G
  • T233C
  • G383A
  • T522C
  • C528A
  • C746A
  • G776A
  • C854T
  • A950G
  • A951G
  • T962C
  • T968C
  • G1064A
  • G1094A
  • T1100C
  • G1133A

seg2

  • G12A
  • A54G
  • G81A
  • T165C
  • T168C
  • T171C
  • T174C
  • T240C
  • T300A
  • T330C
  • C342T
  • A405G
  • G441A
  • G447A
  • G510A
  • C513T
  • A576G
  • A594G

seg3

  • T111C
  • C117T
  • C216T
  • T339C
  • A411G
  • G414A
  • T423C
  • A525C
  • G549A
  • A618G
  • T654C
  • A665G
  • A771G
  • A789G
  • C813T
  • G867A
  • C897T
  • C928T

seg4

  • C111T
  • T159C
  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • C375T
  • C378T
  • A427G
  • C441T
  • T444C
  • G457A
  • G460A
  • A463G
  • A484G
  • C509T
  • T510C

seg5

  • G2T
  • C3T
  • T9C
  • T46C
  • A55G
  • C178T
  • A224G
  • G244T
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • A454G
  • C523T
  • C608T
  • A634G
  • G752A

seg6

  • T9C
  • C125A
  • T134C
  • C137T
  • G194A
  • T212C
  • C309T
  • A358G
  • C394T
  • C399T
  • A504G
  • C519T
  • C534T
  • A660C
  • T714A
  • C849T
  • T879C
  • T885G

seg7

  • C33T
  • C46T
  • A83G
  • T125A
  • C146T
  • G316A
  • A419G
  • G482A
  • G500T
  • G521A
  • G536A
  • A566G
  • C656T
  • A919G
  • A967G
  • T1086C

seg8

  • G26A
  • T103C
  • A118G
  • T163C
  • G190A
  • A267G
  • T341C
  • A352C
  • A374G
  • T391C
  • C419T
  • G422A
  • T577C
  • C604T
  • A610T
  • C632T
  • G661A
  • T775C
Deletions

seg4

562-570
Insertions

seg1

ins_0:GCCTTTA, ins_2334:G

seg2

ins_0:GTTTTC, ins_2358:AAT

seg3

ins_0:GTTTGATTTGTCATA, ins_2241:AGAAAC, ins_2245:ATCAAAAA

seg5

ins_0:ATTTTCTTGTGAACTCCA, ins_1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATACAAAAAAT

seg6

ins_0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAAATGAACA, ins_1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTATCCTTACTAAACTTAATTGTTTCTGAAAAA

seg7

ins_0:TCTTA, ins_1147:AA

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:S208P
  • HA1:S255P
  • HA1:I267V
  • HA1:R279K

M1

  • M1:T15I
  • M1:R105K

NA

  • NA:P42Q
  • NA:I45T
  • NA:T46I
  • NA:R65H
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:D384G
  • NA:A395V
  • NA:S397K
  • NA:V401I

NEP

  • NEP:L30S
  • NEP:S93P

NP

  • NP:I9M
  • NP:T66A
  • NP:V242I
  • NP:V453A
  • NP:R482K
  • NP:P537Q

NS1

  • NS1:K79R
  • NS1:Y104H
  • NS1:K107N
  • NS1:T115A
  • NS1:L130F
  • NS1:D131N
  • NS1:H201Y

PA

  • PA:N222S
  • PA:K312R
  • PA:T352A
  • PA:S530T
  • PA:G708A
  • PA:F709I
  • PA:N714S
  • PA:I723V

PB1

  • PB1:M65I
  • PB1:I317V
  • PB1:I462V
  • PB1:V474I
  • PB1:E748D

PB2

  • PB2:X303I
  • PB2:I492T
  • PB2:X582E
  • PB2:S630N
Deletions

HA1

HA1:162-164
Insertions
N/A