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GenSpectrum
Organisms
Influenza B/Victoria
GenSpectrum
Organisms
Influenza B/Victoria
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Dengue 3
Dengue 4
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Influenza B/Victoria
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GSD_002CN1J.1
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USA/GSD_002CN1J.1/2026-01-29
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Submission details
Submission ID
PZ052509.1.seg1/PZ052510.1.seg2/PZ052511.1.seg3/PZ052512.1.seg4/PZ052513.1.seg5/PZ052514.1.seg6/PZ052515.1.seg7/PZ052516.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 09:57:14 UTC
Date released
2026-03-16 10:41:01 UTC
Clade
Clade HA
V1A.3a.2
Clade NA
B.7.3
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2026-01-29
Isolate name
B/California/LACPHL-INF02256/2026
Host
Host
Homo sapiens
INSDC
INSDC accession seg1
PZ052509.1
INSDC accession seg2
PZ052510.1
INSDC accession seg3
PZ052511.1
INSDC accession seg4
PZ052512.1
INSDC accession seg5
PZ052513.1
INSDC accession seg6
PZ052514.1
INSDC accession seg7
PZ052515.1
INSDC accession seg8
PZ052516.1
NCBI release date
2026-02-25
INSDC seg4
Lineage seg4
vic
Alignment and QC
Length seg1
2180 (56.6%)
Total SNPs seg1
31
Total unknown nucs seg1
859
Length seg2
2313 (97.5%)
Total ambiguous nucs seg2
1
Total SNPs seg2
54
Total unknown nucs seg2
13
Length seg3
2181 (94.2%)
Total SNPs seg3
51
Total unknown nucs seg3
66
Length seg4
1704 (90.8%)
Total ambiguous nucs seg4
1
Total deleted nucs seg4
9
Total SNPs seg4
56
Length seg5
1683 (96.1%)
Total ambiguous nucs seg5
1
Total SNPs seg5
28
Length seg6
1408 (100%)
Total inserted nucs seg6
7
Total SNPs seg6
40
Length seg7
1139 (99.3%)
Total SNPs seg7
17
Length seg8
1034 (97%)
Total SNPs seg8
17
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg1
C
113
T
G
197
A
G
1064
A
G
1094
A
T
1100
C
T
1127
C
G
1133
A
A
1171
G
A
1172
G
G
1175
A
T
1212
C
G
1217
A
G
1223
A
T
1308
C
A
1386
G
A
1406
G
T
1413
C
G
1422
A
Show more
seg2
G
12
A
A
54
G
G
81
A
T
171
C
T
240
C
T
300
A
T
330
C
C
332
A
C
342
T
A
405
G
G
441
A
G
447
A
G
510
A
C
513
T
A
576
G
A
579
G
A
594
G
G
618
A
Show more
seg3
A
96
G
T
111
C
C
117
T
T
327
C
T
339
C
G
361
A
G
414
A
T
423
C
T
546
C
G
549
A
A
618
G
T
654
C
G
683
A
A
771
G
C
813
T
G
867
A
C
897
T
G
936
A
Show more
seg4
T
132
C
T
135
C
T
195
C
C
252
A
C
270
T
G
297
A
G
312
T
A
318
G
A
351
G
C
375
T
C
378
T
T
402
C
A
427
G
C
441
T
T
444
C
G
457
A
A
461
G
A
463
G
Show more
seg5
T
46
C
A
55
G
A
118
G
C
178
T
A
224
G
A
235
G
C
262
T
T
298
C
C
313
T
G
361
A
A
373
G
C
380
T
G
418
A
A
454
G
C
523
T
C
608
T
A
763
G
C
775
T
Show more
seg6
T
9
C
C
125
A
C
140
T
C
151
T
A
158
G
T
212
C
A
358
G
T
363
C
C
394
T
C
399
T
A
423
G
A
504
G
C
519
T
G
537
A
A
660
C
C
664
T
T
714
A
C
849
T
Show more
seg7
C
33
T
C
46
T
A
83
G
T
125
A
T
201
C
G
316
A
A
419
G
G
482
A
T
485
C
G
500
T
G
521
A
A
566
G
C
656
T
G
674
A
T
772
C
A
919
G
A
967
G
seg8
A
106
G
A
118
G
T
163
C
G
190
A
T
341
C
A
352
C
T
391
C
C
419
T
C
604
T
A
610
T
C
632
T
G
661
A
T
775
C
T
838
C
C
882
T
A
950
G
T
963
C
Deletions
seg4
562-570
Insertions
seg6
ins_0:ATGAACA
Amino acid mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
HA1
HA1:
I
117
V
HA1:
A
127
T
HA1:
E
128
G
HA1:
N
129
D
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
E
183
K
HA1:
G
184
E
HA1:
N
197
E
HA1:
A
199
T
HA1:
K
203
R
HA1:
P
241
K
HA1:
R
279
K
M1
M1:
T
15
I
M1:
R
105
K
NA
NA:
P
42
Q
NA:
A
47
V
NA:
P
51
S
NA:
D
53
G
NA:
V
71
A
NA:
I
120
V
NA:
K
220
N
NA:
S
295
R
NA:
N
340
D
NA:
D
342
G
NA:
K
343
E
NA:
E
358
K
NA:
G
378
E
NA:
D
384
G
NA:
A
395
V
NA:
V
401
I
NEP
NEP:
L
30
S
NEP:
L
51
S
NEP:
S
93
P
NP
NP:
I
9
M
NP:
T
66
A
NP:
V
453
A
NS1
NS1:
Y
104
H
NS1:
K
107
N
NS1:
L
130
F
NS1:
H
201
Y
PA
PA:
V
121
I
PA:
S
228
N
PA:
E
351
G
PA:
T
352
A
PA:
S
530
T
PA:
F
709
V
PA:
N
714
S
PA:
I
723
V
PB1
PB1:
M
65
I
PB1:
K
390
R
PB1:
I
462
V
PB1:
V
474
I
PB2
PB2:
T
110
N
PB2:
A
301
T
PB2:
X
303
I
PB2:
M
404
I
PB2:
I
492
T
PB2:
X
582
E
PB2:
P
625
S
Deletions
HA1
HA1:162-164
Insertions
N/A
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