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GSD_002CNES.1

USA/GSD_002CNES.1/2026-02-05
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ052826.1.seg1/PZ052828.1.seg2/PZ052820.1.seg3/PZ052789.1.seg4/PZ052807.1.seg5/PZ052797.1.seg7/PZ052813.1.seg8
Submitting group
Date submitted
2026-03-16 09:57:14 UTC
Date released
2026-03-16 10:41:01 UTC

Clade

Clade HA
V1A.3a.2

Sample details

Collection country
USA
Collection subdivision level 1
Alaska
Collection date
2026-02-05
Isolate name
B/Alaska/USAFSAM-17062/2026

Host

Host

INSDC

INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-02-25

INSDC seg4

Lineage seg4
vic

Alignment and QC

Length seg1
2259 (96.8%)
Total SNPs seg1
38
Length seg2
2313 (98.1%)
Total SNPs seg2
44
Length seg3
2181 (97.1%)
Total SNPs seg3
44
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
49
Length seg5
1683 (96.2%)
Total SNPs seg5
31
Length seg7
1076 (93.8%)
Total SNPs seg7
19
Length seg8
1027 (96.3%)
Total SNPs seg8
22

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C113T
  • A200G
  • T219C
  • G251A
  • G383A
  • T386C
  • C434T
  • T522C
  • C528A
  • C746A
  • A764G
  • C830T
  • C854T
  • A950G
  • T962C
  • T968C
  • C1037T
  • G1064A

seg2

  • G12A
  • A54G
  • G81A
  • T171C
  • T240C
  • T300A
  • T330C
  • C342T
  • A405G
  • G441A
  • G447A
  • C513T
  • A576G
  • T586C
  • A594G
  • A705G
  • G768A
  • A801G

seg3

  • T111C
  • C117T
  • T339C
  • G414A
  • T423C
  • G549A
  • A618G
  • T654C
  • A771G
  • C813T
  • G867A
  • G888A
  • C897T
  • A935G
  • G936A
  • A987G
  • C1006T
  • A1054G

seg4

  • T62C
  • T159C
  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • C375T
  • C378T
  • A427G
  • C441T
  • T444C
  • C453T
  • G457A
  • G460A
  • A463G
  • A484G
  • C509T

seg5

  • T46C
  • C172T
  • C178T
  • A224G
  • A235G
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • G435A
  • A454G
  • C523T
  • C608T
  • A634G
  • T742C
  • A763G
  • C841T

seg7

  • C33T
  • C46T
  • A83G
  • T125A
  • A377G
  • A419G
  • G482A
  • G500T
  • T515C
  • G521A
  • G536A
  • C542T
  • A566G
  • C656T
  • G668A
  • A919G
  • C928T
  • A967G
  • T1075C

seg8

  • A118G
  • T163C
  • G190A
  • T341C
  • A352C
  • T391C
  • T400C
  • T401C
  • C419T
  • A426G
  • C604T
  • A610T
  • C632T
  • G652A
  • G661A
  • G685A
  • T775C
  • C882T
Deletions

seg4

562-570
Insertions
N/A

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:M156V
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

HA2

  • HA2:D150N

M1

  • M1:T15I

NEP

  • NEP:L30S
  • NEP:S93P
  • NEP:V115I

NP

  • NP:T66A
  • NP:R136K
  • NP:V453A

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:S124P
  • NS1:L130F
  • NS1:D132G
  • NS1:H201Y

PA

  • PA:K312R
  • PA:T352A
  • PA:Y458F
  • PA:S530T
  • PA:S547G
  • PA:F709I
  • PA:N714S
  • PA:I723V

PB1

  • PB1:V474I

PB2

  • PB2:X303I
  • PB2:I492T
  • PB2:X582E

SigPep

  • SigPep:V10A
Deletions

HA1

HA1:162-164
Insertions
N/A