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USA/GSD_002D92T.1/2026-01-20
A. S. Lauring, L. Baker & E. Bendall

Lauring Lab at University of Michigan, Department of Microbiology and Immunology

Submission details

Submission ID
PZ070659.1.seg1/PZ070657.1.seg2/PZ070652.1.seg3/PZ070653.1.seg4/PZ070656.1.seg5/PZ070655.1.seg6/PZ070654.1.seg7/PZ070658.1.seg8
Date submitted
2026-03-16 09:57:14 UTC
Date released
2026-03-16 10:42:01 UTC

Clade

Clade HA
V1A.3a.2
Clade NA
B.7.1

Sample details

Collection country
USA
Collection subdivision level 1
Michigan
Collection date
2026-01-20
Isolate name
B/Michigan/UM-10068885728/2026

Host

INSDC

INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-02-27

INSDC seg4

Lineage seg4
vic

Alignment and QC

Length seg1
2259 (96.8%)
Total SNPs seg1
41
Length seg2
2313 (98.1%)
Total SNPs seg2
45
Length seg3
2181 (97.1%)
Total SNPs seg3
48
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
50
Length seg5
1683 (96.2%)
Total SNPs seg5
30
Length seg6
1408 (100%)
Total inserted nucs seg6
7
Total SNPs seg6
35
Length seg7
1076 (93.8%)
Total SNPs seg7
21
Length seg8
1027 (96.3%)
Total SNPs seg8
21

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C113T
  • A200G
  • T219C
  • G251A
  • T305C
  • G383A
  • T386C
  • C434T
  • T522C
  • C528A
  • C581A
  • C708T
  • C746A
  • A764G
  • C830T
  • C854T
  • A950G
  • T962C

seg2

  • G12A
  • A54G
  • G81A
  • T171C
  • T240C
  • T300A
  • T330C
  • C342T
  • A405G
  • G441A
  • G447A
  • G477T
  • C513T
  • A576G
  • T586C
  • A594G
  • A705G
  • G768A

seg3

  • T111C
  • C117T
  • T339C
  • C345T
  • G414A
  • T423C
  • G549A
  • A618G
  • T625G
  • T654C
  • A771G
  • C813T
  • G867A
  • G888A
  • C897T
  • A935G
  • G936A
  • A987G

seg4

  • G144A
  • T159C
  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • C375T
  • C378T
  • A427G
  • C441T
  • C453T
  • G457A
  • G460A
  • A463G
  • A484G
  • C509T
  • T510C

seg5

  • T46C
  • C178T
  • A224G
  • A235G
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • A454G
  • C523T
  • C608T
  • A634G
  • A724G
  • T742C
  • A763G
  • A829G
  • C841T

seg6

  • T9C
  • C125A
  • C152T
  • T155C
  • T212C
  • C318A
  • A358G
  • C394T
  • C399T
  • C429T
  • A504G
  • C519T
  • A557G
  • C657A
  • A660C
  • T714A
  • C849T
  • T879C

seg7

  • C33T
  • C46T
  • A83G
  • T125A
  • A377G
  • T404C
  • A419G
  • G482A
  • G500T
  • T515C
  • G521A
  • A524G
  • G536A
  • C542T
  • A566G
  • C656T
  • G668A
  • A919G

seg8

  • A118G
  • T163C
  • G170A
  • G190A
  • T341C
  • A352C
  • T391C
  • T400C
  • C419T
  • A426G
  • C604T
  • A610T
  • C632T
  • G661A
  • G685A
  • T775C
  • C882T
  • A950G
Deletions

seg4

562-570
Insertions

seg6

ins_0:ATGAACA

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:S216F
  • HA1:R279K

M1

  • M1:T15I

NA

  • NA:P42Q
  • NA:P51L
  • NA:L52S
  • NA:V71A
  • NA:I120V
  • NA:K186R
  • NA:N219K
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:G378E
  • NA:D384G
  • NA:A395I
  • NA:V401I

NEP

  • NEP:L30S
  • NEP:S93P
  • NEP:V115I

NP

  • NP:T66A
  • NP:V453A

NS1

  • NS1:D47N
  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:D132G
  • NS1:H201Y

PA

  • PA:S209A
  • PA:K312R
  • PA:S348N
  • PA:T352A
  • PA:Y458F
  • PA:S530T
  • PA:S547G
  • PA:F709I
  • PA:N714S
  • PA:I723V

PB1

  • PB1:V474I

PB2

  • PB2:X303I
  • PB2:S444N
  • PB2:I492T
  • PB2:X582E
Deletions

HA1

HA1:162-164
Insertions
N/A