Warning: Development or Keycloak main database is enabled. Development environment only.

GSD_002DB4M.1

USA/GSD_002DB4M.1/2026-02-17
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Lu, B. Girinathan, H. Mammadova, P. Leeson, A. Plocik & D. Gratalo

Ginkgo Biosecurity

Submission details

Submission ID
PZ096975.1.seg1/PZ096976.1.seg2/PZ096971.1.seg4/PZ096973.1.seg6/PZ096972.1.seg7/PZ096974.1.seg8
Submitting group
Date submitted
2026-03-16 09:57:14 UTC
Date released
2026-03-16 10:42:01 UTC

INSDC

Bioproject accession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg4
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-03-03

Clade

Clade HA
V1A.3a.2
Clade NA
B.7.3

Sample details

Collection country
USA
Collection subdivision level 1
New York
Collection date
2026-02-17
Isolate name
B/New York/GKISBBBI03337/2026

Host

Host

INSDC seg4

Lineage seg4
vic

Alignment and QC

Length seg1
2356 (100%)
Total inserted nucs seg1
22
Total SNPs seg1
53
Length seg2
2382 (100%)
Total inserted nucs seg2
24
Total SNPs seg2
55
Length seg4
1847 (98.5%)
Total deleted nucs seg4
9
Total SNPs seg4
56
Length seg6
1537 (100%)
Total inserted nucs seg6
136
Total SNPs seg6
37
Length seg7
1167 (100%)
Total inserted nucs seg7
20
Total SNPs seg7
18
Length seg8
1081 (99.6%)
Total inserted nucs seg8
19
Total SNPs seg8
16

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C95T
  • C113T
  • G131T
  • G197A
  • A200G
  • C224T
  • A257G
  • C362T
  • G383A
  • C434T
  • T522C
  • C528A
  • G623A
  • C692T
  • C746A
  • T797C
  • C854T
  • C944T

seg2

  • G12A
  • A30G
  • A54G
  • G81A
  • T171C
  • T240C
  • T300A
  • T330C
  • C332A
  • C342T
  • C387T
  • A405G
  • G441A
  • G447A
  • G510A
  • C513T
  • A576G
  • A579G

seg4

  • T195C
  • C252A
  • C265T
  • C270T
  • G297A
  • G312T
  • A318G
  • G337A
  • A351G
  • C375T
  • C378T
  • T402C
  • A427G
  • C441T
  • T444C
  • G457A
  • A461G
  • A463G

seg6

  • T9C
  • A108G
  • C125A
  • C128T
  • C140T
  • G183A
  • T212C
  • A358G
  • T363C
  • C394T
  • C399T
  • A504G
  • C519T
  • C591T
  • A660C
  • T714A
  • T735C
  • C769A

seg7

  • C33T
  • C46T
  • A83G
  • T125A
  • G316A
  • A419G
  • G440A
  • G482A
  • G500T
  • G521A
  • G536A
  • A566G
  • C656T
  • G668A
  • T772C
  • A919G
  • C946T
  • A967G

seg8

  • G26A
  • A118G
  • T163C
  • G190A
  • T341C
  • A352C
  • T391C
  • C419T
  • C604T
  • A610T
  • C632T
  • G661A
  • T775C
  • C882T
  • A950G
  • T963C
Deletions

seg4

562-570
Insertions

seg1

ins_0:CCTTTA, ins_2334:AGGCTCGTGTTTCTAC

seg2

ins_0:GTTTTC, ins_2358:AATGCTCGTGTTTCTACT

seg6

ins_0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_1401:TGGGAGAATGGTTAAGTTTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTGTCCTTGCTAAACCTAATTGTTTCTGAAAAATGCTCTTGTT

seg7

ins_0:TTCTTA, ins_1147:AAAAGTGCGTTGTT

seg8

ins_1066:TAAAAATCCTCTTGTTACT

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:V87I
  • HA1:I117V
  • HA1:A127T
  • HA1:E128G
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:E183K
  • HA1:G184E
  • HA1:N197E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

M1

  • M1:T15I
  • M1:R105K

NA

  • NA:I36M
  • NA:P42Q
  • NA:T43I
  • NA:A47V
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:G378E
  • NA:D384G
  • NA:A395V
  • NA:V401I

NEP

  • NEP:L30S
  • NEP:S93P

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:H201Y

PB1

  • PB1:M65I
  • PB1:I462V
  • PB1:V474I

PB2

  • PB2:T110N
  • PB2:A301T
  • PB2:X303I
  • PB2:I492T
  • PB2:X582E
Deletions

HA1

HA1:162-164
Insertions
N/A