Warning: Development or Keycloak main database is enabled. Development environment only.
X
GenSpectrum
Organisms
Influenza B/Victoria
GenSpectrum
Organisms
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
Docs
API docs
Influenza B/Victoria
|
Browse data
Select organism section
Browse data
GSD_002DC9A.1
Download
Download FASTA
Download metadata TSV
USA/GSD_002DC9A.1/2026-02-15
A. Rothstein,
G. Muir,
A. Sum,
A. Simas,
B. Lu,
B. Girinathan,
H. Mammadova,
P. Leeson,
A. Plocik &
D. Gratalo
Ginkgo Biosecurity
Submission details
Submission ID
PZ133954.1.seg2/PZ133951.1.seg4/PZ133952.1.seg6/PZ133953.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 09:57:14 UTC
Date released
2026-03-16 10:42:01 UTC
INSDC
Bioproject accession
PRJNA989177
INSDC accession seg2
PZ133954.1
INSDC accession seg4
PZ133951.1
INSDC accession seg6
PZ133952.1
INSDC accession seg8
PZ133953.1
NCBI release date
2026-03-10
Clade
Clade HA
V1A.3a.2
Clade NA
B.8
Sample details
Collection country
USA
Collection subdivision level 1
New York
Collection date
2026-02-15
Isolate name
B/New York/GKISBBBJ00178/2026
Host
Host
Homo sapiens
INSDC seg4
Lineage seg4
vic
Alignment and QC
Length seg2
2381 (100%)
Total inserted nucs seg2
23
Total SNPs seg2
55
Length seg4
1849 (98.6%)
Total deleted nucs seg4
9
Total SNPs seg4
58
Length seg6
1528 (100%)
Total inserted nucs seg6
127
Total SNPs seg6
31
Length seg8
1083 (99.6%)
Total inserted nucs seg8
21
Total SNPs seg8
18
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg2
G
12
A
G
39
A
A
54
G
G
81
A
T
171
C
T
174
C
T
240
C
T
300
A
T
330
C
C
342
T
A
405
G
G
441
A
G
447
A
G
510
A
C
513
T
A
576
G
A
594
G
A
705
G
Show more
seg4
G
39
A
C
188
T
C
252
A
C
270
T
C
276
A
G
297
A
G
312
T
A
318
G
A
351
G
C
375
T
C
378
T
A
427
G
A
435
G
C
441
T
T
444
C
T
456
C
G
457
A
A
462
T
Show more
seg6
T
9
C
C
125
A
T
134
C
T
212
C
A
358
G
C
394
T
C
399
T
A
504
G
C
519
T
C
534
T
A
660
C
T
714
A
C
849
T
T
879
C
T
885
G
A
945
G
C
954
T
C
987
T
Show more
seg8
G
26
A
A
118
G
T
163
C
G
190
A
T
341
C
A
352
C
T
355
C
G
376
A
T
391
C
C
419
T
C
604
T
A
610
T
C
632
T
G
661
A
T
775
C
C
882
T
A
950
G
T
963
C
Deletions
seg4
562-570
Insertions
seg2
ins_0:GTTTTC, ins_2358:AATGCTCGTGTTTCTAC
seg6
ins_0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTATCCTTACTAAACTTAATTGTTTCTGAAAAAT
seg8
ins_1066:TAAAAATCCTCTTGTTACTAC
Amino acid mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
HA1
HA1:
T
37
I
HA1:
I
117
V
HA1:
A
127
T
HA1:
E
128
D
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
G
184
E
HA1:
N
197
E
HA1:
K
203
R
HA1:
P
241
Q
HA1:
R
279
K
NA
NA:
P
42
Q
NA:
I
45
T
NA:
V
71
A
NA:
I
120
V
NA:
K
220
N
NA:
S
295
R
NA:
N
340
D
NA:
K
343
E
NA:
E
358
K
NA:
D
384
G
NA:
A
395
V
NA:
S
397
N
NA:
V
401
I
NA:
K
404
R
NEP
NEP:
L
30
S
NEP:
S
93
P
NS1
NS1:
Y
104
H
NS1:
K
107
N
NS1:
L
130
F
NS1:
H
201
Y
PB2
PB2:
X
303
I
PB2:
I
492
T
PB2:
X
582
E
Deletions
HA1
HA1:162-164
Insertions
N/A
Load sequences