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GSD_002DCC4.1

USA/GSD_002DCC4.1/2026-02-12
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ137048.1.seg3/PZ137030.1.seg4/PZ137039.1.seg5/PZ137044.1.seg8
Submitting group
Date submitted
2026-03-16 09:57:14 UTC
Date released
2026-03-16 10:42:01 UTC

Clade

Clade HA
V1A.3a.2

Sample details

Collection country
USA
Collection subdivision level 1
Kansas
Collection date
2026-02-12
Isolate name
B/Kansas/USAFSAM-17102/2026

Host

Host

INSDC

INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg8
NCBI release date
2026-03-11

INSDC seg4

Lineage seg4
vic

Alignment and QC

Length seg3
2181 (97.1%)
Total SNPs seg3
47
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
47
Length seg5
1683 (96.2%)
Total SNPs seg5
31
Length seg8
1027 (96.3%)
Total SNPs seg8
22

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg3

  • T111C
  • C117T
  • T297C
  • G321A
  • T339C
  • G414A
  • T423C
  • G549A
  • A618G
  • T654C
  • A771G
  • C813T
  • C843T
  • G867A
  • G888A
  • C897T
  • A935G
  • G936A

seg4

  • T159C
  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • C375T
  • C378T
  • A427G
  • C441T
  • T444C
  • C453T
  • G457A
  • G460A
  • A463G
  • A484G
  • C509T
  • T510C

seg5

  • T46C
  • C178T
  • A224G
  • A235G
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • A454G
  • C523T
  • C608T
  • A634G
  • T742C
  • A763G
  • C841T
  • A883G
  • T982C

seg8

  • A118G
  • T163C
  • G190A
  • A322G
  • T341C
  • A352C
  • T391C
  • T400C
  • C419T
  • A426G
  • C604T
  • A610T
  • C632T
  • G661A
  • G685A
  • T775C
  • C882T
  • C941T
Deletions

seg4

562-570
Insertions
N/A

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

NEP

  • NEP:L30S
  • NEP:S93P
  • NEP:V115I

NP

  • NP:T66A
  • NP:V453A

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:D132G
  • NS1:H201Y

PA

  • PA:K312R
  • PA:T352A
  • PA:Y458F
  • PA:S530T
  • PA:S547G
  • PA:F709I
  • PA:N714S
  • PA:I723V
Deletions

HA1

HA1:162-164
Insertions
N/A