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Influenza A/H3N2
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GSD_003C0VG.1
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USA/GSD_003C0VG.1/2026-06-30
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Submission details
Submission ID
PZ741668.1.seg1/PZ741669.1.seg2/PZ741670.1.seg3/PZ741671.1.seg4/PZ741672.1.seg5/PZ741673.1.seg6/PZ741674.1.seg7/PZ741675.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-08-03 13:23:09 UTC
Date released
2026-08-03 15:10:02 UTC
INSDC
bioprojectAccession
PRJNA967387
INSDC accession seg1
PZ741668.1
INSDC accession seg2
PZ741669.1
INSDC accession seg3
PZ741670.1
INSDC accession seg4
PZ741671.1
INSDC accession seg5
PZ741672.1
INSDC accession seg6
PZ741673.1
INSDC accession seg7
PZ741674.1
INSDC accession seg8
PZ741675.1
NCBI release date
2026-07-24
Clade
Clade HA
J.2.4
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2026-06-30
Isolate name
A/California/LACPHL-INF02801/2026
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg1
2280 (97.4%)
Total SNPs seg1
101
Length seg2
2274 (97.1%)
Total ambiguous nucs seg2
1
Total SNPs seg2
116
Length seg3
2149 (96.2%)
Total SNPs seg3
96
Length seg4
1701 (97.9%)
Total SNPs seg4
125
Length seg5
1491 (95.2%)
Total SNPs seg5
54
Length seg6
1380 (95.9%)
Total SNPs seg6
19
Length seg7
976 (95%)
Total SNPs seg7
27
Length seg8
836 (93.9%)
Total SNPs seg8
33
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
C
54
T
G
57
A
T
75
C
G
87
A
C
192
T
C
198
T
T
255
C
A
282
G
C
289
A
A
330
G
A
336
G
G
343
A
G
347
A
A
369
G
G
375
A
A
402
G
T
417
C
T
426
C
Show more
seg2
C
46
T
C
52
T
G
57
A
C
84
A
A
129
G
A
132
T
A
135
G
C
141
T
T
171
C
A
179
G
G
180
A
A
213
T
A
219
G
G
258
A
G
294
A
C
306
T
T
327
C
G
336
A
Show more
seg3
G
57
T
A
99
G
A
120
C
C
144
T
A
156
G
T
174
C
T
177
C
G
210
A
T
222
C
G
243
A
A
324
T
A
333
G
C
340
T
A
342
G
A
345
G
G
363
A
T
369
C
C
378
A
Show more
seg4
A
24
G
T
42
A
G
56
T
C
72
A
T
74
A
C
77
T
C
89
T
G
155
A
A
163
G
C
189
T
G
199
A
C
203
A
C
208
T
G
213
A
G
214
A
G
222
A
A
250
G
A
251
G
Show more
seg5
G
96
A
G
156
A
G
207
A
C
216
T
G
219
A
C
249
T
A
345
C
A
351
G
G
390
A
G
432
T
G
436
T
T
447
C
A
451
C
C
459
T
G
492
A
A
513
G
T
525
C
A
582
C
Show more
seg6
A
64
G
T
100
C
T
137
C
C
142
T
C
349
A
G
456
A
C
797
A
G
838
A
T
1015
C
A
1044
G
T
1129
C
A
1160
G
G
1206
A
C
1270
T
T
1309
C
C
1330
T
G
1342
A
T
1345
C
T
1413
C
seg7
A
37
T
C
188
T
G
205
A
G
208
T
G
214
T
A
241
G
T
292
C
T
298
C
G
328
A
G
358
A
A
466
G
A
481
G
C
493
T
A
517
G
A
538
T
A
637
G
A
658
G
G
680
A
Show more
seg8
C
53
T
T
77
C
G
83
A
G
102
A
A
104
C
C
116
T
C
123
A
T
125
C
C
129
A
C
176
T
G
192
T
T
205
C
T
218
C
A
238
G
T
271
C
C
275
G
G
353
A
G
398
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
F
79
V
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
145
S
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
N
49
S
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
NA
NA:
S
44
P
NA:
R
150
H
NA:
H
264
N
NA:
D
346
G
NA:
N
385
D
NA:
R
400
K
NA:
I
469
T
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
E
421
D
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
V
NS1:
L
185
F
NS1:
K
221
E
NS1:
K
229
E
PA
PA:
V
127
I
PA:
N
142
K
PA:
I
155
M
PA:
K
158
R
PA:
S
208
T
PA:
K
222
N
PA:
K
256
Q
PA:
N
272
S
PA:
I
311
M
PA:
Y
321
C
PA:
V
341
I
PA:
D
382
E
PA:
D
396
E
PA:
I
407
V
PA:
N
409
S
PA:
I
421
V
PA:
Y
437
H
PA:
I
602
V
Show more
PA-X
PA-X:
V
127
I
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
K
158
R
PA-X:
E
209
G
PA-X:
V
212
A
PA-X:
N
222
T
PB1
PB1:
K
52
R
PB1:
V
113
A
PB1:
V
423
I
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
E
618
D
PB1:
N
667
I
PB1:
*
758
Q
PB1-F2
PB1-F2:
E
4
G
PB1-F2:
Q
5
L
PB1-F2:
D
6
G
PB1-F2:
P
8
L
PB1-F2:
I
18
T
PB1-F2:
R
21
E
PB1-F2:
H
32
L
PB1-F2:
N
34
S
PB1-F2:
S
47
N
PB1-F2:
R
59
K
PB1-F2:
S
63
F
PB1-F2:
V
70
A
PB1-F2:
R
73
K
PB1-F2:
H
75
P
PB1-F2:
S
82
P
PB1-F2:
K
85
R
PB1-F2:
W
88
*
PB2
PB2:
A
106
T
PB2:
S
107
N
PB2:
I
147
T
PB2:
E
249
G
PB2:
K
340
R
PB2:
T
351
A
PB2:
K
353
R
PB2:
I
394
V
PB2:
I
451
V
PB2:
V
560
I
PB2:
I
588
T
PB2:
T
613
A
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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