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Influenza A/H3N2
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GSD_003C0WE.1
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USA/GSD_003C0WE.1/2026-07-15
A. Rothstein,
G. Muir,
A. Sum,
A. Simas,
B. Girinathan,
H. Mammadova,
P. Leeson &
D. Gratalo
Perimeter
Submission details
Submission ID
PZ755735.1.seg1/PZ755734.1.seg3/PZ755736.1.seg4/PZ755733.1.seg5/PZ755737.1.seg6/PZ755732.1.seg7
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-08-03 13:23:09 UTC
Date released
2026-08-03 15:10:02 UTC
INSDC
bioprojectAccession
PRJNA989177
INSDC accession seg1
PZ755735.1
INSDC accession seg3
PZ755734.1
INSDC accession seg4
PZ755736.1
INSDC accession seg5
PZ755733.1
INSDC accession seg6
PZ755737.1
INSDC accession seg7
PZ755732.1
NCBI release date
2026-07-28
Clade
Clade HA
K
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
New York
Collection date
2026-07-15
Isolate name
A/New York/GKISBBBI83932/2026
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg1
2318 (99%)
Total SNPs seg1
106
Length seg3
2209 (98.9%)
Total inserted nucs seg3
1
Total SNPs seg3
92
Length seg4
1737 (100%)
Total SNPs seg4
124
Length seg5
1543 (98.5%)
Total SNPs seg5
58
Length seg6
1443 (100%)
Total inserted nucs seg6
4
Total SNPs seg6
21
Length seg7
1004 (97.8%)
Total SNPs seg7
29
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
T
27
C
G
51
T
C
54
T
G
57
A
T
75
C
G
87
A
C
192
T
C
198
T
T
255
C
A
282
G
C
289
A
A
336
G
G
343
A
G
347
A
A
369
G
G
375
A
A
402
G
T
417
C
Show more
seg3
G
22
A
A
99
G
A
120
C
C
144
T
A
156
G
T
174
C
T
177
C
G
210
A
G
243
A
A
324
T
A
333
G
C
340
T
A
342
G
A
345
G
G
363
A
T
369
C
A
396
G
A
435
G
Show more
seg4
T
42
A
G
56
T
A
71
C
C
72
A
T
74
A
C
77
T
C
89
T
G
155
A
A
163
G
T
167
C
C
189
T
G
199
A
C
203
A
C
208
T
G
213
A
G
214
A
G
222
A
A
250
G
Show more
seg5
A
16
G
C
29
T
A
40
C
G
81
A
G
96
A
T
180
G
G
207
A
G
219
A
G
237
A
C
249
T
A
351
G
G
390
A
G
432
T
G
436
T
T
447
C
A
451
C
C
459
T
G
492
A
Show more
seg6
C
40
T
A
64
G
T
100
C
G
112
A
G
313
A
C
349
A
G
456
A
G
517
A
C
797
A
T
1015
C
A
1044
G
A
1079
G
G
1087
A
A
1160
G
C
1163
T
G
1206
A
A
1298
G
G
1342
A
Show more
seg7
A
37
T
C
188
T
G
205
A
G
214
T
A
241
G
T
292
C
T
298
C
A
466
G
A
481
G
C
493
T
A
517
G
G
523
A
G
619
A
C
631
A
A
637
G
A
658
G
G
680
A
C
697
T
Show more
Deletions
N/A
Insertions
seg3
ins_2211:A
seg6
ins_0:G, ins_1439:ACT
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
145
S
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
HA2:
F
205
L
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
V
28
F
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
M2:
D
88
A
NA
NA:
R
150
H
NA:
H
264
N
NA:
D
346
G
NA:
N
358
D
NA:
N
385
D
NA:
P
386
S
NA:
R
400
K
NA:
K
431
E
NA:
H
468
R
NA:
I
469
T
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
T
472
A
PA
PA:
N
142
K
PA:
I
155
M
PA:
K
158
R
PA:
S
208
T
PA:
K
222
N
PA:
K
256
Q
PA:
N
272
S
PA:
I
311
M
PA:
Y
321
C
PA:
D
382
E
PA:
D
396
E
PA:
N
409
S
PA:
I
421
V
PA:
Y
437
H
PA:
I
602
V
PA:
K
605
R
PA:
V
668
I
PA:
N
675
K
PA-X
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
K
158
R
PA-X:
E
209
G
PA-X:
V
212
A
PA-X:
N
222
T
PB2
PB2:
A
106
T
PB2:
S
107
N
PB2:
I
147
T
PB2:
E
249
G
PB2:
K
340
R
PB2:
E
341
D
PB2:
K
353
R
PB2:
I
394
V
PB2:
I
451
V
PB2:
V
461
I
PB2:
V
560
I
PB2:
I
588
T
PB2:
T
613
A
SigPep
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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