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Influenza A/H3N2
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GSD_003C1CG.1
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USA/GSD_003C1CG.1/2026-06-22
W. H. Clore &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
PZ768905.1.seg4/PZ768906.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-08-03 13:23:09 UTC
Date released
2026-08-03 15:10:02 UTC
Clade
Clade HA
unassigned
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Oklahoma
Collection date
2026-06-22
Isolate name
A/swine/Oklahoma/A03690730/2026
INSDC
INSDC accession seg4
PZ768905.1
INSDC accession seg6
PZ768906.1
NCBI release date
2026-07-30
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg4
1701 (97.9%)
Total ambiguous nucs seg4
1
Total SNPs seg4
226
Length seg6
1410 (98%)
Total SNPs seg6
191
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
G
38
T
A
43
G
T
47
A
T
55
A
G
57
A
T
59
C
T
61
C
G
63
T
A
71
C
T
74
C
C
77
T
A
80
G
A
82
G
G
84
T
C
94
T
A
98
G
G
101
A
T
110
G
Show more
seg6
G
34
A
T
46
C
C
52
T
A
53
C
C
54
T
A
55
C
T
57
C
T
59
G
C
61
T
C
63
T
C
73
T
T
74
C
C
76
T
A
83
G
C
91
T
A
95
G
A
106
G
T
110
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
N
6
S
HA1:
D
7
Y
HA1:
T
10
M
HA1:
I
25
L
HA1:
N
31
D
HA1:
S
46
T
HA1:
T
48
K
HA1:
G
50
E
HA1:
D
53
S
HA1:
Q
57
K
HA1:
E
62
K
HA1:
Q
75
H
HA1:
G
78
D
HA1:
F
79
L
HA1:
N
81
D
HA1:
K
82
R
HA1:
K
83
T
Show more
HA2
HA2:
I
32
T
HA2:
N
49
T
HA2:
L
55
V
HA2:
I
56
V
HA2:
G
57
K
HA2:
S
71
T
HA2:
K
82
R
HA2:
I
89
V
HA2:
R
121
K
HA2:
L
167
V
HA2:
N
168
Q
HA2:
E
177
Q
HA2:
S
180
L
HA2:
W
185
L
HA2:
V
200
A
HA2:
A
201
V
NA
NA:
T
16
L
NA:
I
17
T
NA:
S
18
A
NA:
T
19
I
NA:
F
23
L
NA:
I
26
V
NA:
I
30
V
NA:
Q
39
R
NA:
Y
40
H
NA:
E
41
N
NA:
F
42
C
NA:
N
43
D
NA:
P
45
I
NA:
M
51
V
NA:
L
52
V
NA:
I
62
K
NA:
E
74
K
NA:
P
90
S
Show more
SigPep
SigPep:
L
7
F
SigPep:
Y
9
C
SigPep:
L
13
Q
SigPep:
V
14
I
SigPep:
F
15
S
SigPep:
A
16
S
Deletions
N/A
Insertions
N/A
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