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Influenza A/H3N2
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GSD_003C1G8.1
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USA/GSD_003C1G8.1/2026-07-01
W. H. Clore &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
PZ768949.1.seg4/PZ768950.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-08-03 13:23:09 UTC
Date released
2026-08-03 15:10:02 UTC
Clade
Clade HA
unassigned
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Illinois
Collection date
2026-07-01
Isolate name
A/swine/Illinois/A03690758/2026
INSDC
INSDC accession seg4
PZ768949.1
INSDC accession seg6
PZ768950.1
NCBI release date
2026-07-30
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg4
1701 (97.9%)
Total ambiguous nucs seg4
1
Total SNPs seg4
224
Length seg6
1410 (98%)
Total SNPs seg6
176
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
T
26
C
G
38
T
A
43
G
A
45
G
T
46
C
T
47
G
C
48
T
G
56
A
G
57
A
A
67
G
C
72
A
T
74
C
A
81
G
A
82
G
G
91
A
C
92
T
C
94
T
T
110
G
Show more
seg6
G
25
A
G
34
A
C
54
T
A
55
C
T
59
G
T
74
C
C
76
T
A
95
G
T
125
C
T
127
C
A
130
T
T
132
G
C
136
T
C
140
T
C
143
A
T
148
C
G
157
A
G
163
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
Q
1
R
HA1:
L
3
I
HA1:
N
6
G
HA1:
S
9
N
HA1:
T
10
M
HA1:
I
25
L
HA1:
N
31
D
HA1:
G
50
R
HA1:
D
53
N
HA1:
Q
57
K
HA1:
I
58
V
HA1:
E
62
K
HA1:
Q
75
H
HA1:
G
78
D
HA1:
K
83
E
HA1:
V
88
I
HA1:
K
92
T
HA1:
N
96
D
Show more
HA2
HA2:
Q
27
K
HA2:
I
32
T
HA2:
A
43
S
HA2:
L
55
V
HA2:
G
57
K
HA2:
L
91
I
HA2:
R
121
K
HA2:
K
124
R
HA2:
G
150
E
HA2:
G
155
E
HA2:
E
177
Q
HA2:
I
186
V
HA2:
A
201
V
HA2:
K
212
N
HA2:
I
219
V
NA
NA:
T
16
I
NA:
S
18
A
NA:
F
23
L
NA:
I
30
V
NA:
Y
40
H
NA:
E
41
D
NA:
F
42
C
NA:
P
45
S
NA:
P
46
T
NA:
T
56
I
NA:
I
62
K
NA:
I
73
V
NA:
P
81
S
NA:
G
93
N
NA:
T
95
A
NA:
V
143
R
NA:
N
147
D
NA:
V
149
I
Show more
SigPep
SigPep:
L
7
F
SigPep:
Y
9
C
SigPep:
I
10
A
SigPep:
V
14
I
Deletions
N/A
Insertions
N/A
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