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GSD_00580WL.1

Slovakia/GSD_00580WL.1/2026-01-26
T. Sladecek

Science Park of Comenius University of Bratislava, Ilkovicova 8, 841 04 Bratislava

Submission details

Submission ID
OZ414784.1.seg1/OZ414783.1.seg2/OZ414779.1.seg3/OZ414777.1.seg4/OZ414781.1.seg5/OZ414778.1.seg6/OZ414780.1.seg7/OZ414782.1.seg8
Submitting group
Date submitted
2026-03-16 10:08:21 UTC
Date released
2026-03-16 12:16:57 UTC

INSDC

Bioproject accession
Biosample accession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-02-28

Clade

Clade HA
D.3.1
Clade NA
D

Sample details

Collection country
Slovakia
Collection date
2026-01-26

Host

Host

INSDC seg4

Subtype seg4
H1

INSDC seg6

Subtype seg6
N1

Alignment and QC

Length seg1
2303 (100%)
Total inserted nucs seg1
23
Total SNPs seg1
93
Length seg2
2303 (100%)
Total inserted nucs seg2
29
Total SNPs seg2
73
Length seg3
2202 (100%)
Total inserted nucs seg3
51
Total SNPs seg3
86
Length seg4
1737 (99.1%)
Total SNPs seg4
112
Length seg5
1526 (99.7%)
Total inserted nucs seg5
33
Total SNPs seg5
62
Length seg6
1419 (99%)
Total SNPs seg6
24
Length seg7
993 (99.8%)
Total inserted nucs seg7
13
Total SNPs seg7
32
Length seg8
844 (96.2%)
Total inserted nucs seg8
14
Total SNPs seg8
38

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg1

  • A18G
  • G66A
  • A90C
  • A96G
  • A108G
  • A132G
  • A138G
  • G161A
  • A174G
  • T201C
  • A225G
  • A226T
  • C242T
  • A243G
  • C261T
  • C285A
  • A291G
  • C309T

seg2

  • G42A
  • A63G
  • T81C
  • A159G
  • G168A
  • G180A
  • C192A
  • G204A
  • T207A
  • T210C
  • T222C
  • G225A
  • C297T
  • G312A
  • A345G
  • A366G
  • T384C
  • C447T

seg3

  • G40A
  • R53A
  • A56G
  • T81C
  • G84C
  • A88G
  • C90T
  • C99T
  • A114T
  • C153T
  • C162T
  • C165T
  • G187A
  • G204A
  • G298A
  • G423A
  • C468T
  • G477A

seg4

  • A38G
  • C42A
  • A47G
  • T56C
  • G57A
  • A119G
  • T161C
  • C164T
  • G188A
  • A231C
  • C281A
  • C293G
  • C318T
  • G322A
  • G360A
  • G409A
  • G416A
  • A429G

seg5

  • A33G
  • G42T
  • C87T
  • A97G
  • C141A
  • C171T
  • T177C
  • C180T
  • C249A
  • A288C
  • G298A
  • C303T
  • G309A
  • T314C
  • G315A
  • R341A
  • T365A
  • A390G

seg6

  • T44C
  • C285T
  • A392G
  • C452A
  • G607A
  • G659A
  • C728A
  • G748A
  • A785G
  • T799C
  • A818G
  • C893T
  • G914T
  • C929T
  • G950A
  • T1016C
  • A1049G
  • C1187T

seg7

  • G48A
  • G75A
  • T123C
  • C124A
  • G238A
  • G258A
  • A293G
  • G306A
  • G339A
  • G342A
  • C375A
  • T432C
  • A438G
  • G441T
  • G492A
  • C507A
  • A574G
  • C622A

seg8

  • C6A
  • C42T
  • C54T
  • T99C
  • C108A
  • T159C
  • G163A
  • C192T
  • C204T
  • A226T
  • A238G
  • G250A
  • C264T
  • C268A
  • C285T
  • C315T
  • A367G
  • A375T
Deletions
N/A
Insertions

seg1

ins_0:AATATATTCAAT, ins_2280:TGTCGAATTGT

seg2

ins_0:CCATTTGA, ins_2274:TGAATTTAACTTGTCCTTCAT

seg3

ins_0:TACTGATCCAAA, ins_2151:TTGTGGCAATGCTACTATTTGCTATCCATATTGTCCAAA

seg5

ins_0:GTAGATAATCACTCAATGAGTGACATCGAAGCC

seg7

ins_0:TAGATGTTTAAAG

seg8

ins_0:GTGACAAAAACATA

Amino acid mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

HA1

  • HA1:K54Q
  • HA1:S74R
  • HA1:P83S
  • HA1:S84N
  • HA1:D97N
  • HA1:R113K
  • HA1:T120A
  • HA1:N129D
  • HA1:K130N
  • HA1:P137S
  • HA1:A139D
  • HA1:K142R
  • HA1:N156K
  • HA1:L161I
  • HA1:S162N
  • HA1:K163Q
  • HA1:S164T
  • HA1:S183P

HA2

  • HA2:E29D
  • HA2:I45V
  • HA2:E47K
  • HA2:I91V
  • HA2:S124H
  • HA2:I133T
  • HA2:E172K
  • HA2:E179D
  • HA2:V193A

M1

  • M1:L42I
  • M1:V80I
  • M1:K98R
  • M1:M192V
  • M1:Q208K
  • M1:K230R

M2

  • M2:R18K
  • M2:D21G
  • M2:S23N
  • M2:I28T

NA

  • NA:P93S
  • NA:S200N
  • NA:S247N
  • NA:I264T
  • NA:M314I
  • NA:V453M
  • NA:K469N

NEP

  • NEP:D2E
  • NEP:M14T
  • NEP:N29S
  • NEP:T48A
  • NEP:M83I

NP

  • NP:E14D
  • NP:I33V
  • NP:V100I
  • NP:M105T
  • NP:X114E
  • NP:L122Q
  • NP:I136L
  • NP:V217I
  • NP:P318S
  • NP:V425I

NS1

  • NS1:D2E
  • NS1:E55K
  • NS1:T76S
  • NS1:T80A
  • NS1:V84I
  • NS1:L90I
  • NS1:I123V
  • NS1:E125D
  • NS1:K131E
  • NS1:A155T
  • NS1:P164S
  • NS1:V178I
  • NS1:N205S

PA

  • PA:V14I
  • PA:X18E
  • PA:K19R
  • PA:I30V
  • PA:V63I
  • PA:V100I
  • PA:P224S
  • PA:S225C
  • PA:R262K
  • PA:N321K
  • PA:I330V
  • PA:A337T
  • PA:K339N
  • PA:R362K
  • PA:I438V
  • PA:I505V

PA-X

  • PA-X:V14I
  • PA-X:X18E
  • PA-X:K19R
  • PA-X:I30V
  • PA-X:V63I
  • PA-X:V100I
  • PA-X:R199K
  • PA-X:R206K
  • PA-X:R221Q
  • PA-X:L229S

PB1

  • PB1:G154D
  • PB1:V200I
  • PB1:K386R
  • PB1:I397M
  • PB1:I435T
  • PB1:K757R

PB2

  • PB2:R54K
  • PB2:T76S
  • PB2:T81M
  • PB2:K187R
  • PB2:D195N
  • PB2:G225S
  • PB2:R293K
  • PB2:R299K
  • PB2:V344M
  • PB2:I354L
  • PB2:S453T
  • PB2:L475M
  • PB2:T524N
  • PB2:I559M
  • PB2:V667I
  • PB2:V731I

SigPep

  • SigPep:L8M
  • SigPep:A13T
Deletions
N/A
Insertions
N/A