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GSD_00580YG.1

Slovakia/GSD_00580YG.1/2026-01-26
T. Sladecek

Science Park of Comenius University of Bratislava, Ilkovicova 8, 841 04 Bratislava

Submission details

Submission ID
OZ414856.1.seg1/OZ414855.1.seg2/OZ414851.1.seg3/OZ414849.1.seg4/OZ414853.1.seg5/OZ414850.1.seg6/OZ414852.1.seg7/OZ414854.1.seg8
Submitting group
Date submitted
2026-03-16 10:08:21 UTC
Date released
2026-03-16 12:16:57 UTC

INSDC

Bioproject accession
Biosample accession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-02-28

Clade

Clade HA
D.3.1
Clade NA
D

Sample details

Collection country
Slovakia
Collection date
2026-01-26

Host

Host

INSDC seg4

Subtype seg4
H1

INSDC seg6

Subtype seg6
N1

Alignment and QC

Length seg1
2313 (100%)
Total inserted nucs seg1
33
Total SNPs seg1
90
Length seg2
2312 (100%)
Total inserted nucs seg2
38
Total SNPs seg2
75
Length seg3
2208 (100%)
Total inserted nucs seg3
57
Total SNPs seg3
86
Length seg4
1747 (99.7%)
Total SNPs seg4
113
Length seg5
1540 (100%)
Total inserted nucs seg5
43
Total SNPs seg5
59
Length seg6
1432 (99.9%)
Total SNPs seg6
25
Length seg7
994 (99.9%)
Total inserted nucs seg7
13
Total SNPs seg7
31
Length seg8
865 (98.6%)
Total inserted nucs seg8
14
Total SNPs seg8
38

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg1

  • A18G
  • G36A
  • G66A
  • A90C
  • A96G
  • A108G
  • A132G
  • A138G
  • G161A
  • A174G
  • T201C
  • A225G
  • A226T
  • C242T
  • A243G
  • C261T
  • C285A
  • A291G

seg2

  • G42A
  • A63G
  • T81C
  • A159G
  • G168A
  • G180A
  • C192A
  • G204A
  • T207A
  • T210C
  • T222C
  • G225A
  • C297T
  • G312A
  • A345G
  • A366G
  • T384C
  • C447T

seg3

  • G40A
  • R53A
  • T81C
  • G84C
  • A88G
  • C90T
  • C99T
  • A114T
  • C153T
  • C162T
  • C165T
  • G187A
  • G204A
  • G298A
  • G423A
  • C468T
  • G477A
  • G498A

seg4

  • A38G
  • C42A
  • A47G
  • G57A
  • A119G
  • T161C
  • C164T
  • G188A
  • A231C
  • C281A
  • C293G
  • C318T
  • G322A
  • G360A
  • G409A
  • G416A
  • A429G
  • C443T

seg5

  • A33G
  • G42T
  • C87T
  • A97G
  • C141A
  • C171T
  • T177C
  • C180T
  • C249A
  • A288C
  • G298A
  • C303T
  • G309A
  • T314C
  • G315A
  • R341A
  • T365A
  • A390G

seg6

  • T86A
  • C285T
  • A392G
  • A428G
  • C452A
  • G607A
  • A614G
  • G659A
  • C728A
  • G748A
  • A785G
  • T799C
  • A818G
  • C893T
  • G914T
  • C929T
  • G950A
  • T1016C

seg7

  • G48A
  • G75A
  • T123A
  • C124A
  • G238A
  • G258A
  • A293G
  • G306A
  • G339A
  • G342A
  • C375A
  • T432C
  • G441T
  • G492A
  • C507A
  • A574G
  • C622A
  • G633A

seg8

  • C6A
  • C42T
  • C54T
  • T99C
  • C108A
  • T159C
  • G163A
  • C192T
  • C204T
  • A226T
  • A238G
  • G250A
  • C264T
  • C268A
  • C285T
  • C315T
  • A367G
  • A375T
Deletions
N/A
Insertions

seg1

ins_0:AATATATTCAAT, ins_2280:TGTCGAATTGTTTAAAAACGA

seg2

ins_0:CCATTTGA, ins_2274:TGAATTTAACTTGTCCTTCATGAAAAAATG

seg3

ins_0:TACTGATCCAAA, ins_2151:TTGTGGCAATGCTACTATTTGCTATCCATATTGTCCAAAAAAGTA

seg5

ins_0:GTAGATAATCACTCAATGAGTGACATCGAAGCC, ins_1497:AGAAAAATAC

seg7

ins_0:TAGATGTTTAAAG

seg8

ins_0:GTGACAAAAACATA

Amino acid mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

HA1

  • HA1:K54Q
  • HA1:S74R
  • HA1:P83S
  • HA1:S84N
  • HA1:D97N
  • HA1:R113K
  • HA1:T120A
  • HA1:N129D
  • HA1:K130N
  • HA1:P137S
  • HA1:A139D
  • HA1:K142R
  • HA1:N156K
  • HA1:L161I
  • HA1:S162N
  • HA1:K163Q
  • HA1:S164T
  • HA1:S183P

HA2

  • HA2:E29D
  • HA2:I45V
  • HA2:E47K
  • HA2:I91V
  • HA2:S124H
  • HA2:I133T
  • HA2:E172K
  • HA2:E179D
  • HA2:V193A

M1

  • M1:L42I
  • M1:V80I
  • M1:K98R
  • M1:M192V
  • M1:Q208K
  • M1:K230R

M2

  • M2:R18K
  • M2:D21G
  • M2:S23N
  • M2:I28T

NA

  • NA:P93S
  • NA:S200N
  • NA:S247N
  • NA:I264T
  • NA:M314I
  • NA:V453M
  • NA:K469N

NEP

  • NEP:D2E
  • NEP:M14T
  • NEP:N29S
  • NEP:T48A
  • NEP:M52I
  • NEP:M83I

NP

  • NP:E14D
  • NP:I33V
  • NP:V100I
  • NP:M105T
  • NP:X114E
  • NP:L122Q
  • NP:I136L
  • NP:V217I
  • NP:V425I
  • NP:S498N

NS1

  • NS1:D2E
  • NS1:E55K
  • NS1:T76S
  • NS1:T80A
  • NS1:V84I
  • NS1:L90I
  • NS1:I123V
  • NS1:E125D
  • NS1:K131E
  • NS1:A155T
  • NS1:P164S
  • NS1:V178I
  • NS1:N205S
  • NS1:G210R

PA

  • PA:V14I
  • PA:X18E
  • PA:I30V
  • PA:V63I
  • PA:V100I
  • PA:P224S
  • PA:S225C
  • PA:R262K
  • PA:N321K
  • PA:I330V
  • PA:A337T
  • PA:K339N
  • PA:R362K
  • PA:I438V
  • PA:I505V
  • PA:G684R

PA-X

  • PA-X:V14I
  • PA-X:X18E
  • PA-X:I30V
  • PA-X:V63I
  • PA-X:V100I
  • PA-X:R199K
  • PA-X:R206K
  • PA-X:R221Q
  • PA-X:L229S

PB1

  • PB1:G154D
  • PB1:V200I
  • PB1:K386R
  • PB1:I397M
  • PB1:I435T
  • PB1:A726T
  • PB1:K757R

PB2

  • PB2:R54K
  • PB2:T76S
  • PB2:T81M
  • PB2:A184V
  • PB2:K187R
  • PB2:D195N
  • PB2:G225S
  • PB2:V255I
  • PB2:R293K
  • PB2:R299K
  • PB2:V344M
  • PB2:I354L
  • PB2:S453T
  • PB2:L475M
  • PB2:I559M
  • PB2:V667I
  • PB2:V731I

SigPep

  • SigPep:L8M
  • SigPep:A13T
Deletions
N/A
Insertions
N/A