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Influenza A/H1N1pdm
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GSD_0058160.1
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Slovakia/GSD_0058160.1/2026-01-12
T. Sladecek
Science Park of Comenius University of Bratislava, Ilkovicova 8, 841 04 Bratislava
Submission details
Submission ID
OZ415080.1.seg1/OZ415079.1.seg2/OZ415075.1.seg3/OZ415073.1.seg4/OZ415077.1.seg5/OZ415074.1.seg6/OZ415076.1.seg7/OZ415078.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 10:08:21 UTC
Date released
2026-03-16 12:16:57 UTC
INSDC
Bioproject accession
PRJEB72255
Biosample accession
SAMEA121822179
INSDC accession seg1
OZ415080.1
INSDC accession seg2
OZ415079.1
INSDC accession seg3
OZ415075.1
INSDC accession seg4
OZ415073.1
INSDC accession seg5
OZ415077.1
INSDC accession seg6
OZ415074.1
INSDC accession seg7
OZ415076.1
INSDC accession seg8
OZ415078.1
NCBI release date
2026-02-28
Clade
Clade HA
D.3.1
Clade NA
D
Sample details
Collection country
Slovakia
Collection date
2026-01-12
Host
Host
Homo sapiens
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Alignment and QC
Length seg1
2235 (95.1%)
Total SNPs seg1
83
Total unknown nucs seg1
66
Length seg2
2225 (91.6%)
Total inserted nucs seg2
16
Total SNPs seg2
69
Total unknown nucs seg2
126
Length seg3
2105 (90%)
Total inserted nucs seg3
22
Total SNPs seg3
78
Total unknown nucs seg3
147
Length seg4
1685 (96.2%)
Total SNPs seg4
111
Length seg5
1496 (99.7%)
Total inserted nucs seg5
3
Total SNPs seg5
59
Length seg6
1198 (82.9%)
Total SNPs seg6
22
Total unknown nucs seg6
10
Length seg7
956 (97.4%)
Total SNPs seg7
32
Length seg8
811 (92.9%)
Total inserted nucs seg8
9
Total SNPs seg8
35
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
G
66
A
A
90
C
A
96
G
A
108
G
A
132
G
A
138
G
T
201
C
A
225
G
A
226
T
C
242
T
A
243
G
C
261
T
C
285
A
C
309
T
G
363
A
G
375
A
A
441
G
T
483
C
Show more
seg2
T
81
C
A
159
G
G
168
A
G
180
A
C
192
A
G
204
A
T
207
A
T
210
C
T
222
C
G
225
A
T
273
C
C
297
T
G
312
A
A
345
G
A
510
G
A
541
G
G
598
A
A
630
G
Show more
seg3
T
81
C
G
84
C
A
88
G
C
90
T
C
99
T
A
114
T
C
153
T
C
162
T
C
165
T
G
187
A
G
204
A
G
298
A
G
423
A
C
468
T
G
477
A
G
498
A
G
504
A
T
552
C
Show more
seg4
A
38
G
C
42
A
A
47
G
G
57
A
A
119
G
A
134
G
T
161
C
C
164
T
G
188
A
A
231
C
C
281
A
C
293
G
C
318
T
G
322
A
G
360
A
G
409
A
G
416
A
A
429
G
Show more
seg5
A
33
G
G
42
T
C
87
T
A
97
G
C
141
A
C
171
T
T
177
C
C
180
T
C
249
A
A
288
C
G
298
A
C
303
T
G
309
A
T
314
C
G
315
A
R
341
A
T
365
A
A
390
G
Show more
seg6
C
285
T
A
392
G
T
413
C
C
452
A
G
607
A
G
659
A
C
728
A
G
748
A
A
785
G
T
799
C
A
818
G
C
893
T
G
914
T
C
929
T
G
950
A
T
1016
C
A
1049
G
C
1187
T
Show more
seg7
G
48
A
G
75
A
T
123
C
C
124
A
C
192
T
G
238
A
G
258
A
A
293
G
G
306
A
G
339
A
G
342
A
C
375
A
T
432
C
G
441
T
G
492
A
C
507
A
A
574
G
C
622
A
Show more
seg8
C
6
A
C
42
T
C
54
T
T
99
C
C
108
A
T
159
C
G
163
A
C
192
T
C
204
T
A
226
T
A
238
G
G
250
A
C
264
T
C
268
A
C
315
T
A
367
G
A
375
T
A
391
G
Show more
Deletions
N/A
Insertions
seg2
ins_2274:TGAATTTAACTTGTCC
seg3
ins_2151:TTGTGGCAATGCTACTATTTGC
seg5
ins_0:GCC
seg8
ins_0:AAAAACATA
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
A
139
D
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
R
18
K
M2:
D
21
G
M2:
S
23
N
M2:
I
28
T
NA
NA:
P
93
S
NA:
S
200
N
NA:
S
247
N
NA:
I
264
T
NA:
M
314
I
NA:
V
453
M
NEP
NEP:
D
2
E
NEP:
M
14
T
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
T
396
N
NP:
V
425
I
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
T
76
S
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
K
131
E
NS1:
A
155
T
NS1:
P
164
S
NS1:
N
205
S
PA
PA:
I
30
V
PA:
V
63
I
PA:
V
100
I
PA:
P
224
S
PA:
S
225
C
PA:
R
262
K
PA:
R
362
K
PA:
I
438
V
PA:
I
505
V
PA-X
PA-X:
I
30
V
PA-X:
V
63
I
PA-X:
V
100
I
PA-X:
R
206
K
PA-X:
R
221
Q
PA-X:
L
229
S
PB1
PB1:
I
181
V
PB1:
V
200
I
PB1:
R
327
K
PB1:
K
386
R
PB1:
I
397
M
PB1:
I
435
T
PB1:
P
454
S
PB1:
K
757
R
PB2
PB2:
T
76
S
PB2:
T
81
M
PB2:
K
187
R
PB2:
D
195
N
PB2:
G
225
S
PB2:
R
293
K
PB2:
R
299
K
PB2:
V
344
M
PB2:
I
354
L
PB2:
S
453
T
PB2:
L
475
M
PB2:
I
559
M
PB2:
V
667
I
PB2:
V
731
I
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
N/A
Insertions
N/A
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