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Influenza A/H1N1pdm
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GSD_005WAD0.1
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Display Name: USA/GSD_005WAD0.1/2025-12-31
P. Dykema,
N. Hanson,
Q. Yang,
D. Lucas,
S. Jr. Grimmet,
J. Johnson &
K. Waterman
Submission details
Submission ID
PX928297.1.seg1/PX928298.1.seg2/PX928299.1.seg3/PX928300.1.seg4/PX928301.1.seg5/PX928302.1.seg6/PX928303.1.seg7/PX928304.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-01 06:33:20 UTC
Date released
2026-02-01 09:55:57 UTC
Authors
Author affiliations
Washington State Department of Health Public Health Labs, Division of Disease Control and Statistics
Clade
Clade HA
6B.1A.5a.2a.1
Clade NA
D.1
Alignment states and QC metrics seg1
Completeness seg1
94.56%
Length seg1
2277
Total ambiguous nucs seg1
0
Total deleted nucs seg1
0
Total frame shifts seg1
0
Total inserted nucs seg1
21
Total SNPs seg1
79
Total unknown nucs seg1
100
Alignment states and QC metrics seg2
Completeness seg2
81.71%
Length seg2
1944
Total ambiguous nucs seg2
0
Total deleted nucs seg2
0
Total frame shifts seg2
0
Total inserted nucs seg2
22
Total SNPs seg2
62
Total unknown nucs seg2
64
Alignment states and QC metrics seg3
Completeness seg3
96.93%
Length seg3
2130
Total ambiguous nucs seg3
0
Total deleted nucs seg3
0
Total frame shifts seg3
0
Total inserted nucs seg3
45
Total SNPs seg3
77
Total unknown nucs seg3
0
Alignment states and QC metrics seg4
Completeness seg4
95.03%
Length seg4
1665
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
111
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
96.86%
Length seg5
1450
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
0
Total SNPs seg5
60
Total unknown nucs seg5
0
Alignment states and QC metrics seg6
Completeness seg6
88.70%
Length seg6
1271
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
24
Total unknown nucs seg6
0
Alignment states and QC metrics seg7
Completeness seg7
98.98%
Length seg7
972
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
31
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
87.37%
Length seg8
754
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
0
Total SNPs seg8
30
Total unknown nucs seg8
0
Sample details
Collection country
USA
Collection subdivision level 1
Washington,Clark
Collection date
2025-12-31
Isolate name
A/WASHINGTON/WAPHL-816463/2025
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession seg1
PX928297.1
INSDC accession seg2
PX928298.1
INSDC accession seg3
PX928299.1
INSDC accession seg4
PX928300.1
INSDC accession seg5
PX928301.1
INSDC accession seg6
PX928302.1
INSDC accession seg7
PX928303.1
INSDC accession seg8
PX928304.1
NCBI release date
2026-01-28
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
seg1:
G
66
A
seg1:
T
201
C
seg1:
A
225
G
seg1:
A
226
T
seg1:
C
242
T
seg1:
A
243
G
seg1:
C
261
T
seg1:
C
285
A
seg1:
A
291
G
seg1:
C
309
T
seg1:
G
363
A
seg1:
G
375
A
seg1:
A
441
G
seg1:
A
560
G
seg1:
G
583
A
seg1:
C
600
A
seg1:
C
619
T
seg1:
C
666
T
Show more
seg2
seg2:
G
354
A
seg2:
A
366
G
seg2:
C
447
T
seg2:
T
450
C
seg2:
G
461
A
seg2:
A
510
G
seg2:
G
598
A
seg2:
A
630
G
seg2:
G
705
A
seg2:
T
750
C
seg2:
G
810
A
seg2:
A
819
G
seg2:
C
844
T
seg2:
T
852
C
seg2:
C
885
T
seg2:
G
924
A
seg2:
A
933
G
seg2:
G
957
T
Show more
seg3
seg3:
T
81
C
seg3:
G
84
C
seg3:
A
88
G
seg3:
C
90
T
seg3:
C
99
T
seg3:
A
114
T
seg3:
C
153
T
seg3:
C
162
T
seg3:
C
165
T
seg3:
G
187
A
seg3:
G
204
A
seg3:
G
298
A
seg3:
G
423
A
seg3:
G
477
A
seg3:
G
498
A
seg3:
G
504
A
seg3:
G
555
A
seg3:
G
597
A
Show more
seg4
seg4:
C
42
A
seg4:
A
47
G
seg4:
G
57
A
seg4:
A
119
G
seg4:
T
161
C
seg4:
C
164
T
seg4:
G
188
A
seg4:
G
221
A
seg4:
G
227
A
seg4:
A
231
C
seg4:
C
281
A
seg4:
C
293
G
seg4:
C
318
T
seg4:
G
322
A
seg4:
G
360
A
seg4:
G
409
A
seg4:
G
416
A
seg4:
A
429
G
Show more
seg5
seg5:
C
87
T
seg5:
A
97
G
seg5:
C
141
A
seg5:
C
171
T
seg5:
T
177
C
seg5:
C
180
T
seg5:
C
249
A
seg5:
A
288
C
seg5:
G
296
A
seg5:
G
298
A
seg5:
C
303
T
seg5:
G
309
A
seg5:
T
314
C
seg5:
G
315
A
seg5:
R
341
A
seg5:
T
365
A
seg5:
A
390
G
seg5:
T
402
C
Show more
seg6
seg6:
T
224
C
seg6:
A
225
C
seg6:
G
248
A
seg6:
C
301
T
seg6:
T
347
C
seg6:
C
401
T
seg6:
C
452
A
seg6:
G
607
A
seg6:
A
785
G
seg6:
T
799
C
seg6:
A
818
G
seg6:
G
881
T
seg6:
C
893
T
seg6:
G
914
T
seg6:
A
1049
G
seg6:
C
1187
T
seg6:
A
1193
G
seg6:
A
1208
G
Show more
seg7
seg7:
G
48
A
seg7:
G
75
A
seg7:
T
123
C
seg7:
C
124
A
seg7:
A
174
G
seg7:
G
238
A
seg7:
G
258
A
seg7:
A
293
G
seg7:
G
306
A
seg7:
G
339
A
seg7:
G
342
A
seg7:
C
375
A
seg7:
T
432
C
seg7:
G
441
T
seg7:
G
492
A
seg7:
C
507
A
seg7:
A
574
G
seg7:
C
622
A
Show more
seg8
seg8:
T
99
C
seg8:
C
108
A
seg8:
T
159
C
seg8:
G
163
A
seg8:
C
192
T
seg8:
C
204
T
seg8:
A
238
G
seg8:
G
250
A
seg8:
C
264
T
seg8:
C
268
A
seg8:
C
315
T
seg8:
A
367
G
seg8:
A
375
T
seg8:
T
386
C
seg8:
A
391
G
seg8:
G
396
A
seg8:
T
414
C
seg8:
G
463
A
Show more
Deletions
None
Insertions
ins_seg1:2280:TGTCGAATTGTTTAAAAACGA, ins_seg2:2274:TGAATTTAACTTGTCCTTCATG, ins_seg3:2151:TTGTGGCAATGCTACTATTTGCTATCCATATTGTCCAAAAAAGTA
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
A
139
D
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
R
18
K
M2:
D
21
G
M2:
S
23
N
M2:
I
28
T
NA
NA:
N
73
H
NA:
A
98
V
NA:
S
200
N
NA:
I
264
T
NA:
D
449
E
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
I
33
V
NP:
R
99
K
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NS1
NS1:
E
55
K
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
V
129
A
NS1:
K
131
E
NS1:
A
155
T
NS1:
N
205
S
PA
PA:
I
30
V
PA:
V
63
I
PA:
V
100
I
PA:
P
224
S
PA:
S
225
C
PA:
R
262
K
PA:
N
321
K
PA:
I
330
V
PA:
A
337
T
PA:
K
339
N
PA:
R
362
K
PA:
I
438
V
PA:
M
460
I
PA:
I
505
V
PA:
T
570
A
PA-X
PA-X:
I
30
V
PA-X:
V
63
I
PA-X:
V
100
I
PA-X:
R
199
K
PA-X:
N
204
S
PA-X:
R
206
K
PA-X:
R
221
Q
PA-X:
L
229
S
PB1
PB1:
G
154
D
PB1:
V
200
I
PB1:
K
386
R
PB1:
I
397
M
PB1:
I
435
T
PB1:
P
454
S
PB1:
D
729
E
PB1:
K
757
R
PB2
PB2:
T
76
S
PB2:
T
81
M
PB2:
K
187
R
PB2:
D
195
N
PB2:
G
225
S
PB2:
R
293
K
PB2:
R
299
K
PB2:
V
344
M
PB2:
I
354
L
PB2:
S
453
T
PB2:
L
475
M
PB2:
I
559
M
PB2:
V
667
I
PB2:
V
731
I
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
None
Insertions
None
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