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GSD_00607YQ.1

USA/GSD_00607YQ.1/2026-01-14
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PX989614.1.seg1/PX989613.1.seg2/PX989612.1.seg3/PX989607.1.seg4/PX989610.1.seg5/PX989609.1.seg6/PX989608.1.seg7/PX989611.1.seg8
Submitting group
Date submitted
2026-03-16 10:11:18 UTC
Date released
2026-03-16 13:35:41 UTC

Clade

Clade HA
D.3.1
Clade NA
D.1

Sample details

Collection country
USA
Collection subdivision level 1
New York
Collection date
2026-01-14
Isolate name
A/New York/USAFSAM-16784/2026

Host

Host

INSDC

INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-02-11

INSDC seg4

Subtype seg4
H1

INSDC seg6

Subtype seg6
N1

Alignment and QC

Length seg1
2280 (100%)
Total SNPs seg1
90
Length seg2
2274 (100%)
Total SNPs seg2
75
Length seg3
2151 (100%)
Total SNPs seg3
79
Length seg4
1701 (97.1%)
Total SNPs seg4
113
Length seg5
1497 (100%)
Total SNPs seg5
64
Length seg6
1410 (98.4%)
Total SNPs seg6
24
Length seg7
982 (100%)
Total SNPs seg7
31
Length seg8
838 (97.1%)
Total SNPs seg8
35

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg1

  • A18G
  • G66A
  • A90C
  • C93T
  • A96G
  • A108G
  • A132G
  • A138G
  • G161A
  • A174G
  • T201C
  • A225G
  • A226T
  • C242T
  • A243G
  • A255C
  • C261T
  • C285A

seg2

  • C27T
  • G42A
  • A159G
  • G168A
  • G180A
  • C192T
  • C201T
  • T207A
  • T210C
  • T222C
  • G225A
  • C297T
  • G312A
  • T324A
  • G354A
  • A366G
  • C447T
  • T450C

seg3

  • A21G
  • G40A
  • R53A
  • T81C
  • G84C
  • A88G
  • C90T
  • C99T
  • A114T
  • C153T
  • C162T
  • C165T
  • G187A
  • G204A
  • G298A
  • G423A
  • G477A
  • G498A

seg4

  • A38G
  • C42A
  • A47G
  • G57A
  • A119G
  • T161C
  • C164T
  • G188A
  • T219C
  • A231C
  • C281A
  • C293G
  • C318T
  • G322A
  • G360A
  • G409A
  • G416A
  • A429G

seg5

  • A33G
  • G42T
  • C87T
  • A97G
  • C132T
  • C141A
  • C171T
  • T177C
  • C180T
  • C249A
  • A288C
  • G296A
  • G298A
  • C303T
  • G309A
  • T314C
  • G315A
  • R341A

seg6

  • C20T
  • A75G
  • C285T
  • C301T
  • C308T
  • C452A
  • C571T
  • G607A
  • A785G
  • T799C
  • A818G
  • G867A
  • C874T
  • C893T
  • G914T
  • A1049G
  • C1187T
  • A1193G

seg7

  • G48A
  • G75A
  • T123C
  • C124A
  • T168C
  • G238A
  • G258A
  • A293G
  • G306A
  • G339A
  • G342A
  • C375A
  • T432C
  • G441T
  • G492A
  • C507A
  • A574G
  • C622A

seg8

  • C6A
  • C42T
  • C54T
  • G60A
  • T99C
  • C108A
  • T149A
  • T159C
  • G163A
  • C192T
  • T199A
  • C204T
  • A238G
  • G250A
  • C264T
  • C268A
  • C315T
  • A367G
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

HA1

  • HA1:K54Q
  • HA1:S74R
  • HA1:P83S
  • HA1:S84N
  • HA1:D97N
  • HA1:R113K
  • HA1:T120A
  • HA1:N129D
  • HA1:K130N
  • HA1:P137S
  • HA1:A139D
  • HA1:K142R
  • HA1:N156K
  • HA1:L161I
  • HA1:S162N
  • HA1:K163Q
  • HA1:S164T
  • HA1:S183P

HA2

  • HA2:E29D
  • HA2:I45V
  • HA2:E47K
  • HA2:I91V
  • HA2:R123K
  • HA2:S124H
  • HA2:I133T
  • HA2:E172K
  • HA2:E179D
  • HA2:V193A

M1

  • M1:L42I
  • M1:V80I
  • M1:K98R
  • M1:M192V
  • M1:Q208K
  • M1:K230R

M2

  • M2:R18K
  • M2:D21G
  • M2:S23N
  • M2:I28T

NA

  • NA:I23V
  • NA:P93S
  • NA:A98V
  • NA:T188I
  • NA:S200N
  • NA:I264T
  • NA:E287K
  • NA:T289I
  • NA:I396M
  • NA:V453M
  • NA:K469N

NEP

  • NEP:D2E
  • NEP:N29S
  • NEP:T48A
  • NEP:M83I

NP

  • NP:E14D
  • NP:I33V
  • NP:R99K
  • NP:V100I
  • NP:M105T
  • NP:X114E
  • NP:L122Q
  • NP:I136L
  • NP:V217I
  • NP:V425I
  • NP:S498N

NS1

  • NS1:D2E
  • NS1:L50H
  • NS1:E55K
  • NS1:W67R
  • NS1:T80A
  • NS1:V84I
  • NS1:L90I
  • NS1:I123V
  • NS1:E125D
  • NS1:K131E
  • NS1:A155T
  • NS1:N205S

PA

  • PA:V14I
  • PA:X18E
  • PA:I30V
  • PA:V63I
  • PA:V100I
  • PA:P224S
  • PA:S225C
  • PA:R262K
  • PA:N321K
  • PA:I330V
  • PA:A337T
  • PA:K339N
  • PA:R362K
  • PA:I438V
  • PA:I505V

PA-X

  • PA-X:V14I
  • PA-X:X18E
  • PA-X:I30V
  • PA-X:V63I
  • PA-X:V100I
  • PA-X:R199K
  • PA-X:N204S
  • PA-X:R206K
  • PA-X:R221Q
  • PA-X:L229S

PB1

  • PB1:G154D
  • PB1:V200I
  • PB1:K386R
  • PB1:I397M
  • PB1:I435T
  • PB1:P454S
  • PB1:D729E
  • PB1:K757R

PB2

  • PB2:R54K
  • PB2:T76S
  • PB2:T81M
  • PB2:K187R
  • PB2:D195N
  • PB2:G225S
  • PB2:R293K
  • PB2:R299K
  • PB2:V344M
  • PB2:I354L
  • PB2:S453T
  • PB2:L475M
  • PB2:I559M
  • PB2:V667I
  • PB2:V731I

SigPep

  • SigPep:L8M
  • SigPep:A13T
Deletions
N/A
Insertions
N/A