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Influenza A/H3N2
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GSD_006HYKQ.1
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USA/GSD_006HYKQ.1/2026-02-12
A. Rothstein,
G. Muir,
A. Sum,
A. Simas,
B. Lu,
B. Girinathan,
H. Mammadova,
P. Leeson,
A. Plocik &
D. Gratalo
Ginkgo Biosecurity
Submission details
Submission ID
PZ048896.1.seg2/PZ048895.1.seg3/PZ048897.1.seg4/PZ048893.1.seg5/PZ048898.1.seg6/PZ048892.1.seg7/PZ048894.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 10:14:08 UTC
Date released
2026-03-16 15:01:32 UTC
INSDC
Bioproject accession
PRJNA989177
INSDC accession seg2
PZ048896.1
INSDC accession seg3
PZ048895.1
INSDC accession seg4
PZ048897.1
INSDC accession seg5
PZ048893.1
INSDC accession seg6
PZ048898.1
INSDC accession seg7
PZ048892.1
INSDC accession seg8
PZ048894.1
NCBI release date
2026-02-24
Clade
Clade HA
K
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
New Jersey
Collection date
2026-02-12
Isolate name
A/New Jersey/GKISBBBH97734/2026
Host
Host
Homo sapiens
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Alignment and QC
Length seg2
2316 (98.9%)
Total SNPs seg2
110
Length seg3
2204 (98.7%)
Total SNPs seg3
91
Length seg4
1737 (100%)
Total SNPs seg4
125
Length seg5
1540 (98.4%)
Total deleted nucs seg5
1
Total SNPs seg5
55
Length seg6
1442 (100%)
Total inserted nucs seg6
3
Total SNPs seg6
24
Length seg7
1004 (97.8%)
Total SNPs seg7
26
Length seg8
877 (98.5%)
Total SNPs seg8
26
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg2
C
46
T
G
57
A
C
84
A
A
129
G
A
132
T
A
135
G
C
141
T
T
171
C
A
179
G
G
180
A
A
213
T
A
219
G
A
229
G
G
258
A
C
282
T
C
306
T
T
327
C
G
336
A
Show more
seg3
G
22
A
A
99
G
A
120
C
C
144
T
A
156
G
T
174
C
T
177
C
G
210
A
T
222
C
G
243
A
A
324
T
A
333
G
C
340
T
A
342
G
A
345
G
G
363
A
T
369
C
A
396
G
Show more
seg4
A
24
G
T
42
A
G
56
T
A
71
C
C
72
A
T
74
A
C
77
T
C
89
T
G
155
A
A
163
G
C
189
T
G
199
A
C
203
A
C
208
T
G
213
A
G
214
A
G
222
A
A
250
G
Show more
seg5
A
16
G
C
29
T
A
40
C
G
96
A
G
207
A
G
219
A
C
249
T
A
345
C
A
351
G
G
390
A
G
396
A
G
432
T
G
436
T
T
447
C
C
450
T
A
451
C
C
459
T
G
492
A
Show more
seg6
A
64
G
T
74
C
A
77
T
A
89
G
C
142
T
C
349
A
G
456
A
T
460
C
A
610
G
C
682
T
T
778
C
A
791
G
G
838
A
T
853
C
A
936
G
T
1015
C
G
1043
A
A
1051
G
Show more
seg7
A
37
T
C
188
T
G
205
A
G
214
T
A
241
G
T
292
C
T
298
C
A
466
G
A
481
G
C
493
T
A
517
G
G
523
A
A
637
G
A
658
G
G
680
A
C
697
T
T
703
C
C
787
T
Show more
seg8
C
53
T
G
102
A
A
104
C
C
116
T
C
123
A
T
125
C
G
192
T
T
205
C
T
218
C
A
238
G
T
271
C
C
275
G
G
398
A
G
416
A
G
430
A
A
442
G
A
464
G
T
513
C
Show more
Deletions
seg5
1545
Insertions
seg6
ins_0:G, ins_1439:CT
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
K
83
G
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
145
S
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
M2:
D
88
A
NA
NA:
F
23
L
NA:
M
24
L
NA:
I
28
V
NA:
R
150
H
NA:
I
262
V
NA:
H
310
R
NA:
D
346
N
NA:
P
386
S
NA:
R
400
K
NA:
I
469
T
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
V
NS1:
K
221
E
NS1:
K
229
E
PA
PA:
N
142
K
PA:
I
155
M
PA:
K
158
R
PA:
S
208
T
PA:
K
222
N
PA:
K
256
Q
PA:
N
272
S
PA:
I
311
M
PA:
Y
321
C
PA:
D
382
E
PA:
D
396
E
PA:
N
409
S
PA:
I
421
V
PA:
Y
437
H
PA:
I
602
V
PA:
K
605
R
PA:
V
668
I
PA:
N
675
K
PA-X
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
K
158
R
PA-X:
E
209
G
PA-X:
V
212
A
PA-X:
N
222
T
PB1
PB1:
K
52
R
PB1:
I
69
V
PB1:
V
113
A
PB1:
V
423
I
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
E
618
D
PB1:
N
667
I
PB1:
*
758
Q
PB1-F2
PB1-F2:
E
4
G
PB1-F2:
Q
5
L
PB1-F2:
D
6
G
PB1-F2:
P
8
L
PB1-F2:
I
18
T
PB1-F2:
R
21
E
PB1-F2:
H
32
L
PB1-F2:
N
34
S
PB1-F2:
S
47
N
PB1-F2:
T
55
I
PB1-F2:
S
63
F
PB1-F2:
V
70
A
PB1-F2:
R
73
K
PB1-F2:
H
75
L
PB1-F2:
S
82
P
PB1-F2:
N
84
S
PB1-F2:
K
85
R
PB1-F2:
W
88
*
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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