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GSD_006Q3K5.1

USA/GSD_006Q3K5.1/2026-02-03
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ035410.1.seg1/PZ035387.1.seg2/PZ035366.1.seg3/PZ035251.1.seg4/PZ035320.1.seg5/PZ035297.1.seg6/PZ035274.1.seg7/PZ035343.1.seg8
Submitting group
Date submitted
2026-03-16 10:14:08 UTC
Date released
2026-03-16 15:33:51 UTC

Clade

Clade HA
K
Clade NA
None

Sample details

Collection country
USA
Collection subdivision level 1
California
Collection date
2026-02-03
Isolate name
A/California/USAFSAM-16967/2026

Host

Host

INSDC

INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-02-23

INSDC seg4

Subtype seg4
H3

INSDC seg6

Subtype seg6
N2

Alignment and QC

Length seg1
2280 (97.4%)
Total SNPs seg1
101
Length seg2
2274 (97.1%)
Total SNPs seg2
108
Length seg3
2151 (96.3%)
Total SNPs seg3
88
Length seg4
1701 (97.9%)
Total SNPs seg4
125
Length seg5
1497 (95.6%)
Total SNPs seg5
56
Length seg6
1410 (98%)
Total SNPs seg6
19
Length seg7
982 (95.6%)
Total SNPs seg7
27
Length seg8
838 (94.2%)
Total SNPs seg8
31

Nucleotide mutations

Mutations called relative to the NC_007373.1, NC_007372.1, NC_007371.1, CY163680.1, NC_007369.1, CY114383.1, NC_007367.1 & NC_007370.1 references

Substitutions

seg1

  • C54T
  • G57A
  • T75C
  • G87A
  • C192T
  • C198T
  • T255C
  • A282G
  • C289A
  • A336G
  • G343A
  • G347A
  • A369G
  • G375A
  • A402G
  • T417C
  • T426C
  • T438C

seg2

  • C46T
  • G57A
  • C84A
  • A129G
  • A132T
  • A135G
  • C141T
  • T171C
  • A179G
  • G180A
  • A213T
  • A219G
  • G258A
  • C282T
  • C306T
  • T327C
  • G336A
  • A342T

seg3

  • A99G
  • A120C
  • C144T
  • A156G
  • T174C
  • T177C
  • G210A
  • T222C
  • G243A
  • A324T
  • A333G
  • C340T
  • A342G
  • A345G
  • G363A
  • T369C
  • A396G
  • A435G

seg4

  • A24G
  • T42A
  • G56T
  • A71C
  • C72A
  • T74A
  • C77T
  • C89T
  • G155A
  • A163G
  • C189T
  • G199A
  • C203A
  • C208T
  • G213A
  • G214A
  • G222A
  • A250G

seg5

  • G81A
  • G96A
  • T180G
  • G207A
  • G219A
  • G237A
  • C249T
  • A351G
  • G390A
  • G432T
  • G436T
  • T447C
  • A451C
  • C459T
  • G492A
  • A513G
  • T525C
  • G549A

seg6

  • C40T
  • A64G
  • T100C
  • C349A
  • G456A
  • G517A
  • C797A
  • T1015C
  • A1044G
  • A1079G
  • C1159A
  • A1160G
  • T1165C
  • G1206A
  • G1342A
  • G1390A
  • C1405T
  • A1410G
  • T1413C

seg7

  • A37T
  • C188T
  • G205A
  • G214T
  • A241G
  • T292C
  • T298C
  • A466G
  • A481G
  • C493T
  • A517G
  • G523A
  • A637G
  • A658G
  • G664T
  • G680A
  • C697T
  • T703C

seg8

  • C53T
  • G83A
  • G102A
  • A104C
  • C116T
  • C123A
  • T125C
  • G192T
  • T205C
  • T218C
  • A238G
  • T271C
  • C275G
  • G353A
  • G398A
  • G416A
  • A418G
  • G430A
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_007373.1, NC_007372.1, NC_007371.1, CY163680.1, NC_007369.1, CY114383.1, NC_007367.1 & NC_007370.1 references

Substitutions

HA1

  • HA1:K2N
  • HA1:L3I
  • HA1:Q33R
  • HA1:S45N
  • HA1:T48I
  • HA1:G50K
  • HA1:D53N
  • HA1:E62G
  • HA1:K83E
  • HA1:K92R
  • HA1:Y94N
  • HA1:N96S
  • HA1:N121K
  • HA1:T131K
  • HA1:T135K
  • HA1:S138A
  • HA1:R142G
  • HA1:N145S

HA2

  • HA2:I32R
  • HA2:N46D
  • HA2:I77V
  • HA2:R121K
  • HA2:G155E
  • HA2:D160N
  • HA2:I193M
  • HA2:V200I

M1

  • M1:V219I

M2

  • M2:P25L
  • M2:S31N
  • M2:L54F
  • M2:N82S
  • M2:D88A

NA

  • NA:R150H
  • NA:H264N
  • NA:D346G
  • NA:N358D
  • NA:N385D
  • NA:R400K
  • NA:H468R
  • NA:I469T

NP

  • NP:A131S
  • NP:I136L
  • NP:V197I
  • NP:R236K
  • NP:A280V
  • NP:T472A

NS1

  • NS1:E26N
  • NS1:L33I
  • NS1:A56S
  • NS1:V60A
  • NS1:E71G
  • NS1:V82A
  • NS1:M124I
  • NS1:K131R
  • NS1:S135N
  • NS1:D139G
  • NS1:I171V
  • NS1:L185F
  • NS1:K221E
  • NS1:K229E

PA

  • PA:N142K
  • PA:I155M
  • PA:K158R
  • PA:S208T
  • PA:K222N
  • PA:K256Q
  • PA:N272S
  • PA:I311M
  • PA:Y321C
  • PA:D382E
  • PA:D396E
  • PA:N409S
  • PA:I421V
  • PA:Y437H
  • PA:I602V
  • PA:K605R
  • PA:V668I
  • PA:N675K

PA-X

  • PA-X:N142K
  • PA-X:I155M
  • PA-X:K158R
  • PA-X:E209G
  • PA-X:V212A
  • PA-X:N222T

PB1

  • PB1:K52R
  • PB1:V113A
  • PB1:I322V
  • PB1:V423I
  • PB1:L576I
  • PB1:R586K
  • PB1:A587T
  • PB1:E618D
  • PB1:N667I
  • PB1:*758Q

PB1-F2

  • PB1-F2:E4G
  • PB1-F2:Q5L
  • PB1-F2:D6G
  • PB1-F2:P8L
  • PB1-F2:I18T
  • PB1-F2:R21E
  • PB1-F2:H32L
  • PB1-F2:N34S
  • PB1-F2:S47N
  • PB1-F2:T55I
  • PB1-F2:S63F
  • PB1-F2:V70A
  • PB1-F2:R73K
  • PB1-F2:H75L
  • PB1-F2:S82P
  • PB1-F2:K85R
  • PB1-F2:W88*

PB2

  • PB2:A106T
  • PB2:S107N
  • PB2:I147T
  • PB2:E249G
  • PB2:K340R
  • PB2:E341D
  • PB2:K353R
  • PB2:I394V
  • PB2:I451V
  • PB2:V560I
  • PB2:I588T
  • PB2:T613A

SigPep

  • SigPep:T3A
  • SigPep:Y9N
Deletions
N/A
Insertions
N/A