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GSD_006QW81.1

USA/GSD_006QW81.1/2026-02-05
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ053400.1.seg1/PZ052985.1.seg4/PZ053163.1.seg5/PZ053106.1.seg6/PZ053046.1.seg7
Submitting group
Date submitted
2026-03-16 10:14:08 UTC
Date released
2026-03-16 15:37:54 UTC

Clade

Clade HA
K
Clade NA
None

Sample details

Collection country
USA
Collection subdivision level 1
Rhode Island
Collection date
2026-02-05
Isolate name
A/Rhode Island/USAFSAM-17042/2026

Host

Host

INSDC

INSDC accession seg1
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
NCBI release date
2026-02-25

INSDC seg4

Subtype seg4
H3

INSDC seg6

Subtype seg6
N2

Alignment and QC

Length seg1
2280 (97.4%)
Total SNPs seg1
103
Length seg4
1701 (97.9%)
Total SNPs seg4
124
Length seg5
1497 (95.6%)
Total SNPs seg5
53
Length seg6
1410 (98%)
Total SNPs seg6
17
Length seg7
982 (95.6%)
Total SNPs seg7
28

Nucleotide mutations

Mutations called relative to the NC_007373.1, NC_007372.1, NC_007371.1, CY163680.1, NC_007369.1, CY114383.1, NC_007367.1 & NC_007370.1 references

Substitutions

seg1

  • C54T
  • G57A
  • T75C
  • G87A
  • G126A
  • C192T
  • C198T
  • T255C
  • A282G
  • C289A
  • A336G
  • G343A
  • G347A
  • A369G
  • G375A
  • A402G
  • T417C
  • T426C

seg4

  • A24G
  • T42A
  • G56T
  • A71C
  • C72A
  • T74A
  • C77T
  • C89T
  • G155A
  • C189T
  • G199A
  • C203A
  • C208T
  • G213A
  • G214A
  • G222A
  • A250G
  • A251G

seg5

  • G81A
  • G96A
  • T180G
  • G219A
  • G237A
  • C249T
  • A351G
  • G390A
  • G432T
  • G436T
  • T447C
  • A451C
  • C459T
  • G492A
  • A513G
  • T525C
  • A597G
  • C603T

seg6

  • C40T
  • A64G
  • T100C
  • C349A
  • G456A
  • G517A
  • C797A
  • A800G
  • T1015C
  • A1044G
  • A1079G
  • A1160G
  • G1206A
  • G1342A
  • G1390A
  • A1410G
  • T1413C

seg7

  • A37T
  • C188T
  • G205A
  • G214T
  • A241G
  • G250A
  • T292C
  • T298C
  • A481G
  • C493T
  • A517G
  • G523A
  • C574T
  • A637G
  • A658G
  • G680A
  • C697T
  • T703C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_007373.1, NC_007372.1, NC_007371.1, CY163680.1, NC_007369.1, CY114383.1, NC_007367.1 & NC_007370.1 references

Substitutions

HA1

  • HA1:K2N
  • HA1:L3I
  • HA1:S45N
  • HA1:T48I
  • HA1:G50K
  • HA1:D53N
  • HA1:E62G
  • HA1:K83E
  • HA1:K92R
  • HA1:Y94N
  • HA1:N96S
  • HA1:N121K
  • HA1:S124N
  • HA1:T131K
  • HA1:T135K
  • HA1:S138A
  • HA1:R142G
  • HA1:N145S

HA2

  • HA2:I32R
  • HA2:N46D
  • HA2:N53S
  • HA2:I77V
  • HA2:V84I
  • HA2:R121K
  • HA2:G155E
  • HA2:D160N
  • HA2:I193M
  • HA2:V200I

M1

  • M1:V219I

M2

  • M2:P25L
  • M2:V28I
  • M2:S31N
  • M2:L54F
  • M2:N82S
  • M2:D88A

NA

  • NA:R150H
  • NA:H264N
  • NA:T265A
  • NA:D346G
  • NA:N358D
  • NA:N385D
  • NA:R400K
  • NA:H468R
  • NA:I469T

NP

  • NP:A131S
  • NP:I136L
  • NP:V197I
  • NP:R236K
  • NP:T472A

PB2

  • PB2:A106T
  • PB2:S107N
  • PB2:I147T
  • PB2:E249G
  • PB2:K340R
  • PB2:E341D
  • PB2:K353R
  • PB2:I394V
  • PB2:I451V
  • PB2:H453N
  • PB2:V560I
  • PB2:I588T
  • PB2:T613A

SigPep

  • SigPep:T3A
  • SigPep:Y9N
Deletions
N/A
Insertions
N/A