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GSD_006QYRY.1
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USA/GSD_006QYRY.1/2026-02-17
A. Chan
Purdue University, Molecular
Submission details
Submission ID
PZ072204.1.seg4/PZ072205.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 10:14:08 UTC
Date released
2026-03-16 15:37:54 UTC
Clade
Clade HA
unassigned
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Indiana
Collection date
2026-02-17
Isolate name
A/swine/Indiana/A01812336/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg4
PZ072204.1
INSDC accession seg6
PZ072205.1
NCBI release date
2026-03-01
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Alignment and QC
Length seg4
1701 (97.9%)
Frame shifts seg4
HA1:185-187(nt:618-625)
Total deleted nucs seg4
2
Total frame shifts seg4
1
Total inserted nucs seg4
2
Total SNPs seg4
128
Length seg6
1410 (98%)
Total SNPs seg6
181
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
G
23
T
A
24
T
T
26
C
G
33
A
C
34
T
T
42
C
C
44
A
G
52
A
T
60
C
A
80
T
G
91
A
C
94
T
G
104
A
G
113
A
A
125
G
C
131
T
A
156
G
T
185
C
Show more
seg6
C
20
A
G
25
A
G
34
A
A
53
G
A
55
C
A
56
C
T
59
G
T
74
C
C
76
T
C
91
T
A
95
G
A
97
G
T
110
C
A
124
G
T
125
C
A
130
T
T
132
G
C
133
T
Show more
Deletions
seg4
626, 627
Insertions
seg4
ins_617:CC
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
S
9
N
HA1:
T
10
M
HA1:
N
31
D
HA1:
S
45
N
HA1:
S
46
F
HA1:
G
50
E
HA1:
D
53
N
HA1:
H
56
Y
HA1:
E
62
G
HA1:
K
82
N
HA1:
S
91
R
HA1:
K
92
N
HA1:
Y
94
H
HA1:
N
96
D
HA1:
A
106
V
HA1:
D
122
K
HA1:
N
133
D
HA1:
T
135
A
Show more
HA2
HA2:
I
32
S
HA2:
N
46
D
HA2:
L
102
M
HA2:
R
121
K
HA2:
D
164
N
HA2:
K
174
E
HA2:
G
181
E
HA2:
R
216
K
NA
NA:
Q
5
K
NA:
T
16
A
NA:
I
17
L
NA:
S
18
A
NA:
F
23
L
NA:
I
30
V
NA:
Y
40
H
NA:
E
41
D
NA:
F
42
C
NA:
N
43
D
NA:
P
45
S
NA:
L
52
F
NA:
E
54
G
NA:
I
62
K
NA:
T
71
I
NA:
I
73
V
NA:
N
86
I
NA:
G
93
N
Show more
SigPep
SigPep:
K
2
N
SigPep:
T
3
S
SigPep:
A
6
I
SigPep:
Y
9
Q
SigPep:
C
12
Y
SigPep:
F
15
L
Deletions
HA1
HA1:188
Insertions
N/A
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