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Influenza A/H3N2
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GSD_007RYXH.1
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USA/GSD_007RYXH.1/2026-09-11
P. Roychoudhury,
B. E. Nunley,
R. Bakker,
S. E. Ellis &
A. Greninger
University of Washington Virology Lab, Laboratory Medicine and Pathology
Submission details
Submission ID
QB045518.1.seg3/QB045519.1.seg4/QB045520.1.seg5/QB045521.1.seg6/QB045522.1.seg7/QB045523.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-27 09:26:20 UTC
Date released
2026-10-27 10:48:53 UTC
Clade
Clade HA
K
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Washington
Collection date
2026-09-11
Isolate name
A/Washington/WA-UW-83478/2026
Host
Host
Homo sapiens
INSDC
INSDC accession seg3
QB045518.1
INSDC accession seg4
QB045519.1
INSDC accession seg5
QB045520.1
INSDC accession seg6
QB045521.1
INSDC accession seg7
QB045522.1
INSDC accession seg8
QB045523.1
NCBI release date
2026-09-22
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg3
2205 (89.2%)
Total SNPs seg3
84
Total unknown nucs seg3
214
Length seg4
1737 (100%)
Total SNPs seg4
128
Length seg5
1541 (98.4%)
Total SNPs seg5
61
Length seg6
1440 (100%)
Total inserted nucs seg6
1
Total SNPs seg6
20
Length seg7
1002 (97.6%)
Total SNPs seg7
26
Length seg8
865 (97.2%)
Total SNPs seg8
31
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg3
G
22
A
A
99
G
A
120
C
C
144
T
A
156
G
T
174
C
T
177
C
G
210
A
T
222
C
G
243
A
A
324
T
A
333
G
C
340
T
A
342
G
A
345
G
G
363
A
T
369
C
A
396
G
Show more
seg4
A
24
G
T
42
A
G
56
T
A
71
C
C
72
A
T
74
A
C
77
T
A
81
G
C
89
T
G
155
A
A
163
G
C
189
T
G
199
A
C
203
A
C
208
T
G
213
A
G
214
A
G
222
A
Show more
seg5
A
16
G
C
29
T
A
40
C
G
81
A
G
96
A
G
123
A
C
132
T
G
135
A
G
207
A
G
219
A
C
249
T
A
345
C
A
351
G
G
390
A
G
432
T
G
436
T
T
447
C
A
451
C
Show more
seg6
T
19
C
C
40
T
A
64
G
T
100
C
C
138
A
G
160
T
G
199
A
C
349
A
G
456
A
A
643
G
C
797
A
T
1015
C
A
1044
G
A
1079
G
A
1160
G
A
1167
C
G
1206
A
G
1342
A
A
1410
G
T
1413
C
seg7
A
37
T
C
188
T
G
205
A
G
214
T
A
241
G
T
292
C
T
298
C
A
466
G
A
481
G
C
493
T
A
517
G
G
523
A
A
637
G
A
658
G
G
680
A
C
697
T
T
703
C
C
787
T
Show more
seg8
C
53
T
G
83
A
G
102
A
A
104
C
C
116
T
C
123
A
T
125
C
G
192
T
G
204
T
T
205
C
T
218
C
A
238
G
T
271
C
C
275
G
G
353
A
G
398
A
G
416
A
G
430
A
Show more
Deletions
N/A
Insertions
seg6
ins_1439:C
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
N
6
D
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
G
58
S
M2:
N
82
S
NA
NA:
S
44
Y
NA:
M
51
I
NA:
R
150
H
NA:
H
264
N
NA:
D
346
G
NA:
N
358
D
NA:
N
385
D
NA:
K
387
T
NA:
R
400
K
NA:
H
468
R
NA:
I
469
T
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
S
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
S
135
N
NS1:
D
139
G
NS1:
L
185
F
NS1:
K
221
E
NS1:
K
229
E
PA
PA:
N
142
K
PA:
I
155
M
PA:
K
158
R
PA:
S
208
T
PA:
K
222
N
PA:
Y
321
C
PA:
V
323
I
PA:
D
382
E
PA:
D
396
E
PA:
L
400
S
PA:
I
407
V
PA:
N
409
S
PA:
I
421
V
PA:
Y
437
H
PA:
I
602
V
PA:
K
605
R
PA:
V
668
I
PA:
N
675
K
PA-X
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
K
158
R
PA-X:
E
209
G
PA-X:
V
212
A
PA-X:
N
222
T
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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