Warning: Development or Keycloak main database is enabled. Development environment only.

GSD_00DMWXM.1

USA/GSD_00DMWXM.1/2026-06-08
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ584133.1.seg1/PZ584134.1.seg2/PZ584132.1.seg3/PZ584127.1.seg4/PZ584130.1.seg5/PZ584129.1.seg6/PZ584128.1.seg7/PZ584131.1.seg8
Submitting group
Date submitted
2026-08-03 15:05:42 UTC
Date released
2026-08-03 15:29:30 UTC

Clade

Clade HA
V1A.3a.2
Clade NA
B.8

Sample details

Collection country
USA
Collection subdivision level 1
California
Collection date
2026-06-08
Isolate name
B/California/USAFSAM-18039/2026

INSDC

INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-06-26

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg1
2259 (96.8%)
Total SNPs seg1
45
Length seg2
2313 (98.1%)
Total SNPs seg2
57
Length seg3
2181 (97.1%)
Total SNPs seg3
51
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
54
Length seg5
1683 (96.2%)
Total SNPs seg5
28
Length seg6
1408 (100%)
Total inserted nucs seg6
7
Total SNPs seg6
36
Length seg7
1076 (93.8%)
Total SNPs seg7
17
Length seg8
1027 (96.3%)
Total SNPs seg8
23

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C113T
  • G197A
  • A200G
  • T233C
  • T276C
  • G383A
  • G455A
  • T522C
  • C528A
  • C746A
  • G776A
  • C854T
  • A950G
  • A951G
  • T962C
  • T968C
  • G1064A
  • G1094A

seg2

  • G12A
  • A54G
  • G81A
  • T165C
  • T168C
  • T171C
  • T174C
  • T240C
  • T300A
  • T330C
  • C342T
  • A405G
  • G441A
  • A444G
  • G447A
  • G510A
  • C513T
  • A576G

seg3

  • T111C
  • C117T
  • C216T
  • T339C
  • A411G
  • G414A
  • T423C
  • A525C
  • G549A
  • A618G
  • G629A
  • T654C
  • A665G
  • A771G
  • A789G
  • C813T
  • G867A
  • C897T

seg4

  • C111T
  • T159C
  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • C375T
  • C378T
  • A427G
  • C441T
  • T444C
  • G457A
  • G460A
  • A463G
  • A484G
  • C509T
  • T510C

seg5

  • T46C
  • A55G
  • C178T
  • A224G
  • G244T
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • A454G
  • C523T
  • C608T
  • A634G
  • A763G
  • C841T
  • A883G
  • C1048T

seg6

  • T9C
  • C125A
  • T134C
  • G194A
  • G210A
  • T212C
  • C309T
  • A358G
  • C394T
  • C399T
  • A504G
  • C507T
  • C519T
  • C534T
  • A660C
  • T714A
  • C729A
  • C849T

seg7

  • C33T
  • C46T
  • A83G
  • T125A
  • C146T
  • G316A
  • A419G
  • T473C
  • G482A
  • G500T
  • G521A
  • G536A
  • C565T
  • A566G
  • C656T
  • A919G
  • A967G

seg8

  • T103C
  • A118G
  • T163C
  • G190A
  • A267G
  • T341C
  • A352C
  • A374G
  • T391C
  • C419T
  • G422A
  • G573A
  • T577C
  • C604T
  • A610T
  • C632T
  • G661A
  • G771A
Deletions

seg4

562-570
Insertions

seg6

ins_0:ATGAACA

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:G184E
  • HA1:A199T
  • HA1:A202E
  • HA1:K203R
  • HA1:S208P
  • HA1:S255P
  • HA1:I267V
  • HA1:R279K

M1

  • M1:T15I
  • M1:R105K
  • M1:T188M

NA

  • NA:P42Q
  • NA:I45T
  • NA:R65H
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:D384G
  • NA:A395V
  • NA:S397K
  • NA:V401I

NEP

  • NEP:V29I
  • NEP:L30S
  • NEP:S93P

NP

  • NP:I9M
  • NP:T66A
  • NP:V453A

NS1

  • NS1:K79R
  • NS1:Y104H
  • NS1:K107N
  • NS1:T115A
  • NS1:L130F
  • NS1:D131N
  • NS1:R181H
  • NS1:H201Y
  • NS1:R247H

PA

  • PA:R210K
  • PA:N222S
  • PA:K312R
  • PA:T352A
  • PA:S530T
  • PA:G708A
  • PA:F709I
  • PA:N714S
  • PA:I723V

PB1

  • PB1:M65I
  • PB1:I317V
  • PB1:I462V
  • PB1:V474I
  • PB1:E748D

PB2

  • PB2:X303I
  • PB2:I492T
  • PB2:X582E
  • PB2:S630N
Deletions

HA1

HA1:162-164
Insertions
N/A