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Dengue 3
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GSD_00F98RA.1
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Display Name: Mali/GSD_00F98RA.1/2024-10-24
L. Doumbia,
L. Thirion,
A. Dubot-Peres,
O. Koita,
G. Piorkowski,
R. Amaral,
R. Klitting &
X. de Lamballerie
Submission details
Submission ID
PX454676.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-02 04:22:24 UTC
Date released
2026-02-02 04:23:20 UTC
Authors
Author affiliations
Unite des virus emergents, aix marseille universite
Clade & Lineage
Clade
3III_B.2.1
Alignment states and QC metrics
Completeness
81.67%
Length
10628
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
387
Total unknown nucs
1884
Sample details
Collection country
Mali
Collection date
2024-10-24
Isolate name
DENV3-LBMA-MA1616-MLI-2024
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PX454676.1
NCBI release date
2026-02-01
NCBI update date
2026-02-01
Nucleotide mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
G
65
A
T
150
C
C
203
T
T
250
C
C
256
T
A
265
G
C
289
T
T
295
C
G
322
A
C
346
T
C
358
T
C
364
T
C
383
A
A
384
G
T
448
C
T
475
C
T
496
A
C
529
T
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Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
2K
2K:
T
20
I
C
C:
V
19
A
C:
Q
97
R
NS1
NS1:
L
94
I
NS1:
L
178
M
NS1:
T
233
S
NS1:
S
290
N
NS2A
NS2A:
L
23
M
NS2A:
V
41
M
NS2A:
S
45
L
NS2A:
T
112
A
NS2A:
L
114
I
NS2A:
V
127
I
NS2A:
T
142
I
NS2A:
V
150
I
NS2A:
V
180
M
NS2B
NS2B:
P
57
A
NS3
NS3:
F
31
L
NS3:
H
60
Y
NS3:
T
112
M
NS3:
R
338
K
NS3:
A
452
V
NS4A
NS4A:
D
36
H
NS4A:
V
100
I
NS4B
NS4B:
M
15
V
NS4B:
M
151
I
NS4B:
S
157
P
NS4B:
F
160
Y
NS5
NS5:
V
72
I
NS5:
V
181
I
NS5:
T
188
A
NS5:
K
281
R
NS5:
L
603
V
NS5:
T
629
L
NS5:
L
639
P
NS5:
E
820
D
NS5:
P
864
S
NS5:
S
885
A
Deletions
None
Insertions
None
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