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GSD_00FTVQN.1

India/GSD_00FTVQN.1/2024-11-13
Verma. Chandan Kumar, Raj. Anchal, Brijwal. Megha, Mani. Shailendra, Bhattacharya. Jayanta & Bhattacharyya. Sankar

1-Center of Virus Research, Therapeutics and Vaccines, BRIC-Translational Health Science and Technology Institute, Faridabad?121001 ,Delhi-NCR, India,2-Department of Microbiology, All India Institute of Medical Sciences , Ansari Nagar, New Delhi - 110029, Delhi

Submission details

Submission ID
OZ432328.1
Submitting group
Date submitted
2026-03-18 04:10:53 UTC
Date released
2026-03-18 04:11:48 UTC

INSDC

Bioproject accession
Biosample accession
INSDC accession
NCBI release date
2026-03-16
NCBI update date
2026-03-17

Clade & Lineage

Clade
2II_F.1.1

Sample details

Collection country
India
Collection subdivision level 1
New Delhi
Collection date
2024-11-13
Isolate name
Dengue Virus Clinical isolate

Alignment and QC

Length
10701 (93.4%)
Total ambiguous nucs
5
Total SNPs
633
Total unknown nucs
676

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

  • G44A
  • C54T
  • A122G
  • C126T
  • G168A
  • A177G
  • G210A
  • T226C
  • A228G
  • G252A
  • A276G
  • G294A
  • G297A
  • T312C
  • A324G
  • T330C
  • T336C
  • G372T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

C

  • C:K9R
  • C:S101T
  • C:M104I
  • C:L108M

E

  • E:I322V
  • E:N390S
  • E:I462V
  • E:T478S
  • E:I484V

NS1

  • NS1:S80T
  • NS1:T117A
  • NS1:S128L
  • NS1:Q131H
  • NS1:K174R
  • NS1:F178S
  • NS1:N222S
  • NS1:L247F
  • NS1:I264T
  • NS1:T265A
  • NS1:K272R
  • NS1:D281E

NS2A

  • NS2A:V5I
  • NS2A:S39A
  • NS2A:M136I
  • NS2A:Q162R
  • NS2A:I171A

NS3

  • NS3:M13V
  • NS3:K15R
  • NS3:A120T
  • NS3:I140V
  • NS3:A160T
  • NS3:R186K
  • NS3:V273I
  • NS3:I333M
  • NS3:V395I
  • NS3:I461V

NS4A

  • NS4A:D23N
  • NS4A:R76K
  • NS4A:I89V

NS4B

  • NS4B:L13F
  • NS4B:A19T
  • NS4B:V48I
  • NS4B:F112L

NS5

  • NS5:Y247H
  • NS5:I271T
  • NS5:V335I
  • NS5:R430G
  • NS5:V522M
  • NS5:K570R
  • NS5:G605V
  • NS5:I637A
  • NS5:Q644K
  • NS5:A648V
  • NS5:S676N
  • NS5:I687V
  • NS5:K800T
Deletions
N/A
Insertions
N/A