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GSD_00FTVVC.1

India/GSD_00FTVVC.1/2024-10-04
Verma. Chandan Kumar, Raj. Anchal, Brijwal. Megha, Mani. Shailendra, Bhattacharya. Jayanta & Bhattacharyya. Sankar

1-Center of Virus Research, Therapeutics and Vaccines, BRIC-Translational Health Science and Technology Institute, Faridabad?121001 ,Delhi-NCR, India,2-Department of Microbiology, All India Institute of Medical Sciences , Ansari Nagar, New Delhi - 110029, Delhi

Submission details

Submission ID
OZ432332.1
Submitting group
Date submitted
2026-03-18 04:18:57 UTC
Date released
2026-03-18 04:19:50 UTC

INSDC

Bioproject accession
Biosample accession
INSDC accession
NCBI release date
2026-03-16
NCBI update date
2026-03-17

Clade & Lineage

Clade
1III_A.3

Sample details

Collection country
India
Collection subdivision level 1
New Delhi
Collection date
2024-10-04
Isolate name
Dengue Virus Clinical isolate

Alignment and QC

Length
10567 (94.7%)
Total ambiguous nucs
8
Total SNPs
776
Total unknown nucs
398

Nucleotide mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

  • A112G
  • G123A
  • A166G
  • T171G
  • T208C
  • T230A
  • T244C
  • T274C
  • G302A
  • G349A
  • A351G
  • A355G
  • A363G
  • T368C
  • G388A
  • T397C
  • C443T
  • C451A
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

C

  • C:R10Q
  • C:V26G
  • C:L46M
  • C:G70S
  • C:K86R
  • C:N90S

E

  • E:D37N
  • E:T88A
  • E:I114L
  • E:T161I
  • E:K203E
  • E:I293T
  • E:M297V
  • E:F337I
  • E:S338L
  • E:S339T
  • E:A369T
  • E:V380I
  • E:I436V
  • E:I439V

NS1

  • NS1:V93A
  • NS1:S94N
  • NS1:A98T
  • NS1:D127E
  • NS1:V128T
  • NS1:N139D
  • NS1:N146D
  • NS1:I162V
  • NS1:V178M
  • NS1:T307I
  • NS1:K324R
  • NS1:K347R

NS2A

  • NS2A:I15V
  • NS2A:L41F
  • NS2A:T44I
  • NS2A:A64V
  • NS2A:K67R
  • NS2A:R82K
  • NS2A:V106I
  • NS2A:A147T
  • NS2A:V155I
  • NS2A:F159L
  • NS2A:H162D
  • NS2A:I171V
  • NS2A:L199F

NS2B

  • NS2B:K55R
  • NS2B:I106V

NS3

  • NS3:R185K
  • NS3:V221I
  • NS3:V384I
  • NS3:Q396K
  • NS3:V452A

NS4A

  • NS4A:Q19L
  • NS4A:R20K
  • NS4A:R76K
  • NS4A:I89M
  • NS4A:M97I

NS4B

  • NS4B:H17Q
  • NS4B:A18V
  • NS4B:A19V
  • NS4B:A27T
  • NS4B:V31I
  • NS4B:K212R

NS5

  • NS5:I34M
  • NS5:L123I
  • NS5:Y127H
  • NS5:K130R
  • NS5:T135I
  • NS5:A245T
  • NS5:V270I
  • NS5:K364R
  • NS5:A365P
  • NS5:R378K
  • NS5:N585S
  • NS5:A616V
  • NS5:T635N
  • NS5:P636S
  • NS5:K647E
  • NS5:T651V
  • NS5:I873V
  • NS5:F881Y
  • NS5:P894S

prM

  • prM:T59A
  • prM:E72D
  • prM:K118R
Deletions
N/A
Insertions
N/A