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Influenza A/H1N1pdm
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GSD_00FYSE2.1
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USA/GSD_00FYSE2.1/2026-04-02
W. H. Clore &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
PZ310314.1.seg4/PZ310315.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-30 06:22:05 UTC
Date released
2026-04-30 06:23:02 UTC
Clade
Clade HA
C.1.9.3
Clade NA
D.2
Sample details
Collection country
USA
Collection subdivision level 1
Nebraska
Collection date
2026-04-02
Isolate name
A/swine/Nebraska/A02758901/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg4
PZ310314.1
INSDC accession seg6
PZ310315.1
NCBI release date
2026-04-21
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg4
1701 (97.1%)
Total SNPs seg4
109
Length seg6
1410 (98.4%)
Total SNPs seg6
22
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg4
C
42
A
A
47
G
C
62
A
C
64
T
A
119
G
G
137
A
T
161
C
C
164
T
T
167
A
G
188
A
A
231
C
C
293
A
G
311
A
T
320
C
G
322
A
G
338
T
G
360
A
A
429
G
Show more
seg6
A
144
G
G
163
A
C
274
T
C
452
A
A
527
G
G
607
A
G
667
A
C
776
T
A
785
G
T
799
C
A
818
G
C
893
T
G
914
T
T
1016
C
A
1049
G
C
1187
T
A
1193
G
C
1301
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
S
84
N
HA1:
D
97
N
HA1:
T
120
A
HA1:
N
125
D
HA1:
D
127
N
HA1:
N
129
D
HA1:
A
141
T
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
I
166
V
HA1:
K
169
Q
HA1:
S
183
P
HA1:
S
185
I
HA1:
A
186
T
Show more
HA2
HA2:
V
18
I
HA2:
E
47
K
HA2:
F
88
L
HA2:
I
91
V
HA2:
S
124
N
HA2:
E
172
K
HA2:
E
179
D
HA2:
I
183
T
HA2:
I
189
V
NA
NA:
I
46
V
NA:
S
52
N
NA:
S
89
F
NA:
S
200
N
NA:
R
220
K
NA:
I
264
T
NA:
V
453
M
NA:
L
463
V
NA:
K
469
N
SigPep
SigPep:
L
8
M
SigPep:
A
15
V
Deletions
N/A
Insertions
N/A
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