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Influenza A/H1N1pdm
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GSD_00FYSW3.1
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USA/GSD_00FYSW3.1/2026-03-10
W. H. Clore &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
PZ305367.1.seg4/PZ305368.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-30 06:22:05 UTC
Date released
2026-04-30 06:23:02 UTC
Clade
Clade HA
D.3.1
Clade NA
D.2
Sample details
Collection country
USA
Collection subdivision level 1
Iowa
Collection date
2026-03-10
Isolate name
A/swine/Iowa/A02758746/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg4
PZ305367.1
INSDC accession seg6
PZ305368.1
NCBI release date
2026-04-20
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg4
1707 (97%)
Total ambiguous nucs seg4
1
Total inserted nucs seg4
6
Total SNPs seg4
113
Length seg6
1410 (98.4%)
Total SNPs seg6
25
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg4
C
42
A
A
47
G
G
57
A
A
119
G
T
161
C
C
164
T
G
188
A
G
209
A
A
231
C
A
232
G
C
281
A
C
293
G
A
315
G
C
318
T
G
322
A
C
344
T
G
360
A
G
416
A
Show more
seg6
A
144
G
G
163
C
C
227
T
A
237
G
C
452
A
A
470
G
G
607
A
C
703
T
G
750
A
A
785
G
T
799
C
A
818
G
C
893
T
G
914
T
T
944
C
T
1016
C
C
1024
T
A
1049
G
Show more
Deletions
N/A
Insertions
seg4
ins_530:AAAGAA
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
R
HA1:
S
74
R
HA1:
T
82
A
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
T
120
A
HA1:
N
129
D
HA1:
P
137
S
HA1:
K
142
R
HA1:
G
155
E
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
HA1:
S
185
I
HA1:
A
186
T
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
N
135
D
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
NA
NA:
I
46
V
NA:
S
52
T
NA:
R
77
G
NA:
S
200
N
NA:
A
232
V
NA:
D
248
N
NA:
I
264
T
NA:
S
339
L
NA:
G
382
E
NA:
V
453
M
NA:
K
469
N
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
N/A
Insertions
HA1
ins_HA1:153:KE
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