Warning: Development or Keycloak main database is enabled. Development environment only.

GSD_00FZ59X.1

Guam/GSD_00FZ59X.1/2026-03-29
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ307756.1.seg1/PZ307760.1.seg2/PZ307751.1.seg3/PZ307734.1.seg4/PZ307746.1.seg8
Submitting group
Date submitted
2026-05-02 04:32:04 UTC
Date released
2026-05-02 04:32:50 UTC

Clade

Clade HA
V1A.3a.2

Sample details

Collection country
Guam
Collection subdivision level 1
Yigo
Collection date
2026-03-29
Isolate name
B/Yigo/USAFSAM-17401/2026

Host

Host

INSDC

INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg8
NCBI release date
2026-04-21

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg1
2259 (96.8%)
Total SNPs seg1
45
Length seg2
2313 (98.1%)
Total SNPs seg2
58
Length seg3
2181 (97.1%)
Total SNPs seg3
53
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
54
Length seg8
1027 (96.3%)
Total SNPs seg8
19

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C113T
  • G197A
  • A200G
  • G236A
  • A359G
  • G383A
  • C434T
  • T522C
  • C528A
  • C746A
  • A827G
  • C854T
  • A950G
  • T962C
  • T968C
  • C989T
  • T995C
  • G1064A

seg2

  • G12A
  • A54G
  • G72A
  • G81A
  • T171C
  • T174C
  • T240C
  • G289T
  • T300A
  • T330C
  • C342T
  • G348A
  • A405G
  • T411C
  • G441A
  • G447A
  • G510A
  • C513T

seg3

  • T88C
  • T111C
  • C117T
  • T339C
  • G414A
  • T423C
  • G549A
  • A618G
  • T654C
  • A771G
  • C813T
  • T837C
  • G867A
  • C897T
  • A935G
  • G936A
  • A987G
  • C1006T

seg4

  • G39A
  • C188T
  • C252A
  • C270T
  • C276A
  • G297A
  • G312T
  • A318G
  • A351G
  • C375T
  • C378T
  • A427G
  • A435G
  • C441T
  • T444C
  • T456C
  • G457A
  • A462T

seg8

  • A118G
  • T163C
  • G190A
  • T341C
  • A352C
  • G376A
  • T391C
  • C419T
  • C604T
  • A610T
  • C632T
  • T641C
  • G661A
  • G676A
  • G678A
  • T775C
  • C882T
  • A950G
  • T963C
Deletions

seg4

562-570
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:T37I
  • HA1:I117V
  • HA1:A127T
  • HA1:E128D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:G184E
  • HA1:N197E
  • HA1:A202V
  • HA1:K203R
  • HA1:R279K

NEP

  • NEP:L30S
  • NEP:S93P

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:H201Y
  • NS1:S216N

PA

  • PA:K312R
  • PA:T352A
  • PA:S530T
  • PA:F709V
  • PA:N714S
  • PA:I723V

PB1

  • PB1:M65I
  • PB1:V474I

PB2

  • PB2:A96S
  • PB2:X303I
  • PB2:D360E
  • PB2:I492T
  • PB2:X582E
  • PB2:E682G
Deletions

HA1

HA1:162-164
Insertions
N/A