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GSD_00FZ5CR.1

USA/GSD_00FZ5CR.1/2026-04-06
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ307759.1.seg1/PZ307755.1.seg3/PZ307738.1.seg4/PZ307745.1.seg5/PZ307743.1.seg6/PZ307741.1.seg7/PZ307750.1.seg8
Submitting group
Date submitted
2026-05-02 04:32:04 UTC
Date released
2026-05-02 04:32:50 UTC

Clade

Clade HA
V1A.3a.2
Clade NA
B.3

Sample details

Collection country
USA
Collection subdivision level 1
North Dakota
Collection date
2026-04-06
Isolate name
B/North Dakota/USAFSAM-17409/2026

Host

Host

INSDC

INSDC accession seg1
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-04-21

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg1
2259 (96.8%)
Total SNPs seg1
50
Length seg3
2181 (97.1%)
Total SNPs seg3
52
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
47
Length seg5
1683 (96.2%)
Total SNPs seg5
29
Length seg6
1408 (100%)
Total inserted nucs seg6
7
Total SNPs seg6
34
Length seg7
1076 (93.8%)
Total SNPs seg7
22
Length seg8
1027 (96.3%)
Total SNPs seg8
23

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C113T
  • A171G
  • G197A
  • A200G
  • G383A
  • C434T
  • A443C
  • T522C
  • C528A
  • A707G
  • C746A
  • G776A
  • T813C
  • A815G
  • C854T
  • A950G
  • T962C
  • T968C

seg3

  • T111C
  • C117T
  • C120T
  • T147C
  • A186C
  • T339C
  • G414A
  • T423C
  • A618G
  • T654C
  • A771G
  • A786G
  • C813T
  • A834G
  • G867A
  • A870C
  • C897T
  • A935G

seg4

  • T159C
  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • C375T
  • C378T
  • A427G
  • C441T
  • T444C
  • C453T
  • G457A
  • G460A
  • A463G
  • A484G
  • C509T
  • T510C

seg5

  • T46C
  • C178T
  • A224G
  • A235G
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • A454G
  • C523T
  • C608T
  • A634G
  • T742C
  • A763G
  • C841T
  • A883G
  • G1024A

seg6

  • C44T
  • C125A
  • T212C
  • A358G
  • C394T
  • C399T
  • A408C
  • A423G
  • A504G
  • C519T
  • A595G
  • A660C
  • T690C
  • T714A
  • C849T
  • T879C
  • T885G
  • C954T

seg7

  • C33T
  • C46T
  • A83G
  • T125A
  • A377G
  • A419G
  • G482A
  • G500T
  • T515C
  • G521A
  • A524G
  • G536A
  • C542T
  • A566G
  • C603T
  • C656T
  • G668A
  • A851G

seg8

  • C36A
  • G37A
  • A118G
  • T163C
  • G190A
  • A352C
  • T391C
  • G415A
  • C419T
  • C487T
  • G598A
  • C604T
  • A610T
  • A627G
  • C632T
  • G661A
  • G678A
  • G685A
Deletions

seg4

562-570
Insertions

seg6

ins_0:ATGAACA

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

BM2

  • BM2:I35V

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

HA2

  • HA2:D158N

M1

  • M1:T15I

NA

  • NA:S15L
  • NA:P42Q
  • NA:V71A
  • NA:I120V
  • NA:N199D
  • NA:K220N
  • NA:S295R
  • NA:T319S
  • NA:N340D
  • NA:D342K
  • NA:K343E
  • NA:E358K
  • NA:G378E
  • NA:D384G
  • NA:A395V
  • NA:V401I

NEP

  • NEP:A2E
  • NEP:L30S
  • NEP:S93P
  • NEP:D113N

NP

  • NP:T66A
  • NP:V453A

NS1

  • NS1:A2E
  • NS1:K107N
  • NS1:L130F
  • NS1:N199S
  • NS1:H201Y
  • NS1:S216N

PA

  • PA:K312R
  • PA:T352A
  • PA:D529N
  • PA:S530T
  • PA:F709V
  • PA:N714S
  • PA:I723V

PB1

  • PB1:I57V
  • PB1:M65I
  • PB1:V474I
Deletions

HA1

HA1:162-164
Insertions
N/A