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GSD_00FZ5SW.1

USA/GSD_00FZ5SW.1/2026-04-05
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Lu, B. Girinathan, H. Mammadova, P. Leeson, A. Plocik & D. Gratalo

Ginkgo Biosecurity

Submission details

Submission ID
PZ311412.1.seg2/PZ311408.1.seg4/PZ311410.1.seg5/PZ311409.1.seg6/PZ311411.1.seg8
Submitting group
Date submitted
2026-05-02 04:32:04 UTC
Date released
2026-05-02 04:32:50 UTC

INSDC

bioprojectAccession
INSDC accession seg2
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg8
NCBI release date
2026-04-21

Clade

Clade HA
V1A.3a.2
Clade NA
B.8

Sample details

Collection country
USA
Collection subdivision level 1
New Jersey
Collection date
2026-04-05
Isolate name
B/New Jersey/GKISBBBI51190/2026

Host

Host

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg2
2381 (100%)
Total inserted nucs seg2
23
Total SNPs seg2
55
Length seg4
1849 (98.6%)
Total deleted nucs seg4
9
Total SNPs seg4
56
Length seg5
1831 (100%)
Total inserted nucs seg5
81
Total SNPs seg5
38
Length seg6
1542 (100%)
Total inserted nucs seg6
141
Total SNPs seg6
40
Length seg8
1083 (99.6%)
Total inserted nucs seg8
21
Total SNPs seg8
22

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg2

  • G12A
  • A54G
  • T66C
  • G81A
  • T165C
  • T168C
  • T171C
  • T174C
  • T240C
  • T300A
  • T330C
  • C342T
  • A405G
  • G441A
  • G447A
  • G510A
  • C513T
  • A576G

seg4

  • G148A
  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • A351G
  • C375T
  • C378T
  • T390C
  • A427G
  • A435G
  • C441T
  • T444C
  • T456C
  • G457A
  • A484G
  • C509T

seg5

  • C3T
  • T46C
  • A55G
  • C178T
  • T213G
  • A224G
  • A235G
  • G244A
  • T298C
  • C313T
  • G361A
  • C367T
  • A373G
  • C380T
  • C409T
  • A454G
  • C523T
  • C608T

seg6

  • T9C
  • C125A
  • T134C
  • T138A
  • G194A
  • T212C
  • G213A
  • A358G
  • C394T
  • C399T
  • A504G
  • C519T
  • C534T
  • G537A
  • G543A
  • A660C
  • T714A
  • C849T

seg8

  • G6A
  • G26A
  • A118G
  • T163C
  • T166C
  • G190A
  • T217C
  • T341C
  • A352C
  • T355C
  • C358A
  • T391C
  • C419T
  • A472G
  • C604T
  • A610T
  • C632T
  • G661A
Deletions

seg4

562-570
Insertions

seg2

ins_0:GTTTTC, ins_2358:AATGCTCGTGTTTCTAC

seg5

ins_0:GCATTTTCTTGTGAACTCCA, ins_1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATATAAAAAATGCTGTTGTTTCTAC

seg6

ins_0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTATCCTTACTAAACTTAATTGTTTCTGAAAAATGCTCTTGTTACTAC

seg8

ins_1066:TAAAAATCCTCTTGTTACTAC

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:V24I
  • HA1:I117V
  • HA1:A127T
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:G184E
  • HA1:N197E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

NA

  • NA:P42Q
  • NA:I45T
  • NA:R65H
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:M369T
  • NA:D384G
  • NA:A395V
  • NA:S397K
  • NA:V401I

NEP

  • NEP:L30S
  • NEP:S93P

NP

  • NP:I9M
  • NP:V62G
  • NP:T66A
  • NP:V453A

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:H201Y

PB2

  • PB2:X303I
  • PB2:I492T
  • PB2:X582E
Deletions

HA1

HA1:162-164
Insertions
N/A