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GSD_00FZ5TU.1

USA/GSD_00FZ5TU.1/2026-04-06
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Lu, B. Girinathan, H. Mammadova, P. Leeson, A. Plocik & D. Gratalo

Ginkgo Biosecurity

Submission details

Submission ID
PZ311415.1.seg2/PZ311413.1.seg4/PZ311414.1.seg6
Submitting group
Date submitted
2026-05-02 04:32:04 UTC
Date released
2026-05-02 04:32:50 UTC

INSDC

bioprojectAccession
INSDC accession seg2
INSDC accession seg4
INSDC accession seg6
NCBI release date
2026-04-21

Clade

Clade HA
V1A.3a.2
Clade NA
B.7.1

Sample details

Collection country
USA
Collection subdivision level 1
New York
Collection date
2026-04-06
Isolate name
B/New York/GKISBBBI61042/2026

Host

Host

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg2
2381 (100%)
Total inserted nucs seg2
23
Total SNPs seg2
47
Length seg4
1847 (98.5%)
Total deleted nucs seg4
9
Total SNPs seg4
49
Length seg6
1529 (100%)
Total inserted nucs seg6
128
Total SNPs seg6
34

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg2

  • G12A
  • A54G
  • G81A
  • T171C
  • T240C
  • T300A
  • T330C
  • C342T
  • A405G
  • G441A
  • G447A
  • C476A
  • C513T
  • A576G
  • T586C
  • A594G
  • A705G
  • G768A

seg4

  • T159C
  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • C375T
  • C378T
  • A427G
  • C441T
  • T444C
  • C453T
  • G457A
  • G460A
  • A463G
  • A484G
  • C509T
  • T510C

seg6

  • T9C
  • C125A
  • T155C
  • T212C
  • C318A
  • A358G
  • C394T
  • C399T
  • C429T
  • A504G
  • C519T
  • A557G
  • A660C
  • T714A
  • G825A
  • C849T
  • T879C
  • T885G
Deletions

seg4

562-570
Insertions

seg2

ins_0:GTTTTC, ins_2358:AATGCTCGTGTTTCTAC

seg6

ins_0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAAATGAACA, ins_1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTGTCCTTACTAAACTTAATTGTTTCTGAAAAAT

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:M156V
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

NA

  • NA:P42Q
  • NA:L52S
  • NA:V71A
  • NA:I120V
  • NA:K186R
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:G378E
  • NA:D384G
  • NA:A395I
  • NA:V401I

PB2

  • PB2:P158Q
  • PB2:X303I
  • PB2:I492T
  • PB2:X582E
Deletions

HA1

HA1:162-164
Insertions
N/A