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GSD_00FZ6JB.1

USA/GSD_00FZ6JB.1/2026-04-10
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ343989.1.seg2/PZ343982.1.seg3/PZ343966.1.seg4/PZ343972.1.seg6/PZ343977.1.seg8
Submitting group
Date submitted
2026-05-02 04:32:04 UTC
Date released
2026-05-02 04:32:50 UTC

Clade

Clade HA
V1A.3a.2
Clade NA
B.8

Sample details

Collection country
USA
Collection subdivision level 1
Massachusetts
Collection date
2026-04-10
Isolate name
B/Massachusetts/USAFSAM-17423/2026

Host

Host

INSDC

INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg6
INSDC accession seg8
NCBI release date
2026-04-29

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg2
2313 (98.1%)
Total SNPs seg2
53
Length seg3
2181 (97.1%)
Total SNPs seg3
58
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
56
Length seg6
1408 (100%)
Total inserted nucs seg6
7
Total SNPs seg6
34
Length seg8
1027 (96.3%)
Total SNPs seg8
19

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg2

  • G12A
  • G39A
  • A54G
  • G81A
  • T171C
  • T174C
  • T240C
  • T300A
  • T330C
  • C342T
  • A405G
  • G441A
  • G447A
  • G510A
  • C513T
  • A576G
  • A594G
  • A705G

seg3

  • T15C
  • T72C
  • T88C
  • T111C
  • C117T
  • T339C
  • G414A
  • T423C
  • G549A
  • A618G
  • A708G
  • A771G
  • C813T
  • T837C
  • G867A
  • C897T
  • A935G
  • G936A

seg4

  • G39A
  • C188T
  • C252A
  • C270T
  • C276A
  • G297A
  • G312T
  • A318G
  • A351G
  • C375T
  • C378T
  • A427G
  • A435G
  • C441T
  • T444C
  • T456C
  • G457A
  • A462T

seg6

  • T9C
  • C125A
  • A133G
  • T134C
  • T212C
  • A358G
  • C394T
  • C399T
  • G459A
  • A504G
  • C519T
  • C534T
  • G543T
  • A660C
  • T714A
  • C849T
  • T879C
  • T885G

seg8

  • A118G
  • T163C
  • G190A
  • T341C
  • A352C
  • T355C
  • G376A
  • T391C
  • C419T
  • C604T
  • A610T
  • C632T
  • C648T
  • G661A
  • T775C
  • T788C
  • C882T
  • A950G
  • T963C
Deletions

seg4

562-570
Insertions

seg6

ins_0:ATGAACA

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:T37I
  • HA1:I117V
  • HA1:A127T
  • HA1:E128D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:G184E
  • HA1:N197E
  • HA1:K203R
  • HA1:P241Q
  • HA1:R279K

NA

  • NA:P42Q
  • NA:I45A
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:D384G
  • NA:A395V
  • NA:S397N
  • NA:V401I
  • NA:K404R

NEP

  • NEP:L30S
  • NEP:S93P

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:H201Y
  • NS1:T206I
  • NS1:S253P

PA

  • PA:K312R
  • PA:T352A
  • PA:S530T
  • PA:S699N
  • PA:F709V
  • PA:N714S
  • PA:D721G
  • PA:I723V

PB2

  • PB2:X303I
  • PB2:I492T
  • PB2:X582E
Deletions

HA1

HA1:162-164
Insertions
N/A