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Influenza A/H3N2
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GSD_00FZDJ4.1
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USA/GSD_00FZDJ4.1/2026-04-08
A. Rothstein,
G. Muir,
A. Sum,
A. Simas,
B. Lu,
B. Girinathan,
H. Mammadova,
P. Leeson,
A. Plocik &
D. Gratalo
Ginkgo Biosecurity
Submission details
Submission ID
PZ311432.1.seg3/PZ311433.1.seg4/PZ311431.1.seg5/PZ311434.1.seg6/PZ311430.1.seg7
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-02 04:42:08 UTC
Date released
2026-05-02 04:42:54 UTC
INSDC
bioprojectAccession
PRJNA989177
INSDC accession seg3
PZ311432.1
INSDC accession seg4
PZ311433.1
INSDC accession seg5
PZ311431.1
INSDC accession seg6
PZ311434.1
INSDC accession seg7
PZ311430.1
NCBI release date
2026-04-21
Clade
Clade HA
K
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Virginia
Collection date
2026-04-08
Isolate name
A/Virginia/GKISBBBI59882/2026
Host
Host
Homo sapiens
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg3
2209 (98.9%)
Total inserted nucs seg3
1
Total SNPs seg3
94
Length seg4
1737 (100%)
Total SNPs seg4
125
Length seg5
1543 (98.5%)
Total SNPs seg5
59
Length seg6
1443 (100%)
Total inserted nucs seg6
4
Total SNPs seg6
17
Length seg7
1004 (97.8%)
Total SNPs seg7
24
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg3
G
22
A
A
99
G
A
120
C
C
144
T
A
156
G
T
174
C
T
177
C
G
210
A
T
222
C
G
243
A
A
324
T
A
333
G
C
340
T
A
342
G
A
345
G
G
363
A
T
369
C
A
396
G
Show more
seg4
A
24
G
T
42
A
G
56
T
A
71
C
C
72
A
T
74
A
C
77
T
C
89
T
G
155
A
A
163
G
C
189
T
G
197
A
G
199
A
C
203
A
C
208
T
G
213
A
G
214
A
G
222
A
Show more
seg5
A
16
G
C
29
T
A
40
C
G
81
A
G
96
A
G
207
A
G
219
A
C
249
T
A
345
C
A
351
G
G
390
A
G
432
T
G
436
T
T
447
C
A
451
C
C
459
T
G
492
A
G
495
A
Show more
seg6
C
40
T
A
64
G
T
100
C
A
274
G
C
349
A
G
456
A
T
511
C
C
797
A
T
1015
C
A
1038
G
A
1044
G
A
1079
G
A
1160
G
G
1206
A
G
1342
A
A
1410
G
T
1413
C
seg7
A
37
T
C
188
T
G
199
A
G
205
A
G
214
T
T
292
C
T
298
C
A
466
G
A
481
G
C
493
T
A
517
G
G
523
A
A
637
G
A
658
G
G
680
A
C
697
T
T
703
C
C
787
T
Show more
Deletions
N/A
Insertions
seg3
ins_2211:A
seg6
ins_0:G, ins_1439:ACT
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
R
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
145
S
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
NA
NA:
R
150
H
NA:
H
264
N
NA:
K
344
R
NA:
D
346
G
NA:
N
358
D
NA:
N
385
D
NA:
R
400
K
NA:
H
468
R
NA:
I
469
T
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
E
421
D
NP:
T
472
A
PA
PA:
N
142
K
PA:
I
155
M
PA:
K
158
R
PA:
S
208
T
PA:
K
222
N
PA:
K
256
Q
PA:
N
272
S
PA:
I
311
M
PA:
Y
321
C
PA:
D
382
E
PA:
D
396
E
PA:
N
409
S
PA:
I
421
V
PA:
Y
437
H
PA:
I
602
V
PA:
K
605
R
PA:
V
668
I
PA:
N
675
K
PA-X
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
K
158
R
PA-X:
E
209
G
PA-X:
V
212
A
PA-X:
N
222
T
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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