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Influenza A/H3N2
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GSD_00FZDK2.1
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USA/GSD_00FZDK2.1/2026-04-04
A. Chan
Purdue University, Molecular
Submission details
Submission ID
PZ318891.1.seg4/PZ318892.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-02 04:42:08 UTC
Date released
2026-05-02 04:42:54 UTC
Clade
Clade HA
unassigned
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Indiana
Collection date
2026-04-04
Isolate name
A/swine/Indiana/A01812339/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg4
PZ318891.1
INSDC accession seg6
PZ318892.1
NCBI release date
2026-04-23
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg4
1740 (99.9%)
Total inserted nucs seg4
4
Total SNPs seg4
97
Length seg6
1438 (99.5%)
Total inserted nucs seg6
6
Total SNPs seg6
151
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
T
13
C
C
16
T
T
26
C
T
42
C
C
77
T
A
80
T
G
91
A
C
94
T
G
113
A
A
125
G
C
202
T
A
206
T
G
214
A
G
222
A
C
231
T
C
284
T
T
308
C
G
311
T
Show more
seg6
G
34
A
C
54
T
A
55
C
T
59
G
T
74
C
C
76
T
A
95
G
A
97
G
G
104
A
T
110
C
T
125
C
G
128
A
A
130
T
T
132
G
A
134
G
C
140
T
T
148
C
A
154
T
Show more
Deletions
N/A
Insertions
seg4
ins_1737:CCTT
seg6
ins_1439:CTCCTT
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
S
9
N
HA1:
T
10
M
HA1:
S
46
F
HA1:
G
50
E
HA1:
D
53
N
HA1:
H
56
Y
HA1:
K
82
N
HA1:
Y
94
H
HA1:
D
122
N
HA1:
N
133
D
HA1:
T
135
A
HA1:
N
144
S
HA1:
K
158
N
HA1:
N
165
E
HA1:
K
173
Q
HA1:
V
186
A
HA1:
N
189
K
HA1:
F
193
S
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
E
72
D
HA2:
R
121
K
HA2:
D
164
N
HA2:
G
181
E
HA2:
R
216
K
NA
NA:
T
16
I
NA:
S
18
A
NA:
F
23
L
NA:
I
30
V
NA:
V
33
I
NA:
Y
40
H
NA:
E
41
N
NA:
F
42
C
NA:
N
43
D
NA:
P
45
S
NA:
Q
49
H
NA:
L
52
F
NA:
I
62
K
NA:
I
73
V
NA:
A
82
T
NA:
G
93
N
NA:
L
126
Q
NA:
V
143
G
Show more
SigPep
SigPep:
Y
9
H
Deletions
N/A
Insertions
N/A
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